Gene omics information

Query gene ID At1g47885
Gene name leucine-rich repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g47885841205leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:cellular_component unknown;POBS.X.H.G.
0.5065.3At3g553003769718transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.4355.3At5g39630833959vesicle transport v-SNARE family proteinF:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAVS.X.H.G.
0.4050.8At4g31960829326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3846.7At5g51900835265cytochrome P450 familyF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOAS.X.H.G.
0.3338.1At2g24000816934scpl22 (serine carboxypeptidase-like 22)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBS.X.H.G.
0.2726.2At2g28170817363ATCHX7member of Putative Na+/H+ antiporter familyS.X.H.G.
0.2014.4At3g59180825087-F:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.1710.2At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.146.8At1g65210842828-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
340.4100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
321.3100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
313.4100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
282.0100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
277.6100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
257.8100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
252.0100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
241.5100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
240.2100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
232.9100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.093e-1891At1g47890841206AtRLP7 (Receptor Like Protein 7)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAVC.G.S.X.
0.087e-754At1g45616841101AtRLP6 (Receptor Like Protein 6)F:protein binding;P:signal transduction, defense response;C:membrane;PMOBFAVC.G.S.X.
0.026e-444At5g20690832192ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.016e-134At5g59680836089leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.016e-134At2g16390816136DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1)Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin.C.G.S.X.
0.012e+032At5g56040835702leucine-rich repeat protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.022e+032At5g20550832177oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMC.G.S.X.
0.022e+032At5g14970831349unknown proteinF:unknown;P:unknown;C:unknown;BOPC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e+032Glycine maxGmaAffx.69307.1.S1_atBQ473855--2e-1At4g02465unknown proteinC.G.S.X.
0.035e+030Hordeum vulgareHV08L18u_atHV08L18u--1e+0At5g25870unknown proteinC.G.S.X.
0.035e+032Oryza sativaOs01g0549100AK119995.1-Conserved hypothetical protein2e-5At3g26610polygalacturonase, putative / pectinase, putativeC.G.S.X.
0.053e+032Populus trichocarpaPtpAffx.225163.1.S1_s_atpmrna44304hypothetical protein-5e-1At5g46350WRKY8C.G.S.X.
0.043e+032Triticum aestivumTa.3629.3.S1_a_atCA710982--4e+0At3g10860ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeC.G.S.X.
0.047e-132Vitis vinifera1611980_atCA816758--4e+0At1g47885leucine-rich repeat family proteinC.G.S.X.
0.041e+032Zea maysZmAffx.786.1.A1_atAI759096--3e-3At1g72450JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage