CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g47885

Gene name leucine-rich repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g47885 841205 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cellular_component unknown;POB S.X. H.G.
0.50 65.3 At3g55300 3769718 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.43 55.3 At5g39630 833959 vesicle transport v-SNARE family protein F:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAV S.X. H.G.
0.40 50.8 At4g31960 829326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.38 46.7 At5g51900 835265 cytochrome P450 family F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOA S.X. H.G.
0.33 38.1 At2g24000 816934 scpl22 (serine carboxypeptidase-like 22) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.27 26.2 At2g28170 817363 ATCHX7 member of Putative Na+/H+ antiporter family S.X. H.G.
0.20 14.4 At3g59180 825087 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.17 10.2 At1g76780 844012 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.14 6.8 At1g65210 842828 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
340.4 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
321.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
313.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
282.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
277.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
257.8 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
252.0 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
241.5 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
240.2 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
232.9 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 3e-18 91 At1g47890 841206 AtRLP7 (Receptor Like Protein 7) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV C.G. S.X.
0.08 7e-7 54 At1g45616 841101 AtRLP6 (Receptor Like Protein 6) F:protein binding;P:signal transduction, defense response;C:membrane;PMOBFAV C.G. S.X.
0.02 6e-4 44 At5g20690 832192 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 6e-1 34 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 6e-1 34 At2g16390 816136 DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin. C.G. S.X.
0.01 2e+0 32 At5g56040 835702 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 2e+0 32 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM C.G. S.X.
0.02 2e+0 32 At5g14970 831349 unknown protein F:unknown;P:unknown;C:unknown;BOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Glycine max GmaAffx.69307.1.S1_at BQ473855 - - 2e-1 At4g02465 unknown protein C.G. S.X.
0.03 5e+0 30 Hordeum vulgare HV08L18u_at HV08L18u - - 1e+0 At5g25870 unknown protein C.G. S.X.
0.03 5e+0 32 Oryza sativa Os01g0549100 AK119995.1 - Conserved hypothetical protein 2e-5 At3g26610 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.225163.1.S1_s_at pmrna44304 hypothetical protein - 5e-1 At5g46350 WRKY8 C.G. S.X.
0.04 3e+0 32 Triticum aestivum Ta.3629.3.S1_a_at CA710982 - - 4e+0 At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1611980_at CA816758 - - 4e+0 At1g47885 leucine-rich repeat family protein C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.786.1.A1_at AI759096 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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