CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g47420

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.95 97.0 At1g47420 841147 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;PO S.X. H.G.
0.94 96.7 At2g21870 816723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBA S.X. H.G.
0.88 94.0 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. S.X. H.G.
0.82 90.9 At5g13450 831186 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPF S.X. H.G.
0.71 84.2 At5g66510 836783 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. S.X. H.G.
0.67 81.6 At1g22300 838837 GRF10 (GENERAL REGULATORY FACTOR 10) Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 S.X. H.G.
0.64 78.9 At5g63510 836470 GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1) Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. S.X. H.G.
0.61 76.7 At4g02580 828130 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative F:electron carrier activity, NAD or NADH binding, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;BOMFPA S.X. H.G.
0.61 76.7 At3g02090 821084 mitochondrial processing peptidase beta subunit, putative F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAV S.X. H.G.
0.50 65.3 At1g22450 838851 COX6B (CYTOCHROME C OXIDASE 6B) subunit 6b of cytochrome c oxidase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 98.4 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
5.2 98.2 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
5.0 98.1 GSM133949 Murray_2-5_T8-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
5.0 98.1 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
4.7 98.0 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
4.6 97.9 E-MEXP-1443-raw-cel-1581869515
4.5 97.8 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
4.3 97.7 GSM153927 ahg1-1 rep2 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
4.3 97.7 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
4.2 97.6 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 1e-38 161 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. C.G. S.X.
0.01 4e-1 36 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. C.G. S.X.
0.02 4e-1 36 At5g04400 830319 anac077 (Arabidopsis NAC domain containing protein 77) F:DNA binding;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBM C.G. S.X.
0.02 4e-1 36 At5g47750 834826 D6PKL2 (D6 PROTEIN KINASE LIKE 2) F:kinase activity;P:protein amino acid phosphorylation;C:nucleolus, nucleus, cytoplasm;MOPFBVA C.G. S.X.
0.02 4e-1 36 At3g47440 823898 TIP5 Encodes AtTIP5;1, functions as water and urea channels in pollen. C.G. S.X.
0.03 4e-1 36 At1g80940 844434 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.02 4e-1 36 At1g02650 837951 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, binding;P:protein folding;C:cellular_component unknown;PMFOB C.G. S.X.
0.01 2e+0 34 At5g04560 830335 DME (DEMETER) Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 44 Glycine max GmaAffx.92081.1.S1_at CF807806 - - 1e-3 At1g47420 - C.G. S.X.
0.11 8e-4 44 Hordeum vulgare Contig4905_s_at Contig4905 - - 2e-3 At1g47420 - C.G. S.X.
0.07 7e-1 36 Oryza sativa Os04g0418000 AK106155.1 - Conserved hypothetical protein 6e-1 At1g47420 - C.G. S.X.
0.11 4e-8 59 Populus trichocarpa Ptp.1909.1.A1_at CV269232 hypothetical protein - 3e-8 At1g47420 - C.G. S.X.
0.11 2e-3 44 Triticum aestivum Ta.1834.2.A1_at BQ161474 - - 1e-3 At1g47420 - C.G. S.X.
0.15 8e-15 79 Vitis vinifera 1608146_at CF415273 hypothetical protein LOC100253931 - 3e-14 At1g47420 - C.G. S.X.
0.10 2e-4 46 Zea mays Zm.1996.1.S1_at CK347826 hypothetical protein LOC100276029 - 6e-4 At1g47420 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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