Gene omics information

Query gene ID At1g47420
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9597.0At1g47420841147-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;POS.X.H.G.
0.9496.7At2g21870816723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBAS.X.H.G.
0.8894.0At1g47260841129GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.S.X.H.G.
0.8290.9At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFS.X.H.G.
0.7184.2At5g66510836783GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.S.X.H.G.
0.6781.6At1g22300838837GRF10 (GENERAL REGULATORY FACTOR 10)Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1S.X.H.G.
0.6478.9At5g63510836470GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.S.X.H.G.
0.6176.7At4g02580828130NADH-ubiquinone oxidoreductase 24 kDa subunit, putativeF:electron carrier activity, NAD or NADH binding, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;BOMFPAS.X.H.G.
0.6176.7At3g02090821084mitochondrial processing peptidase beta subunit, putativeF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAVS.X.H.G.
0.5065.3At1g22450838851COX6B (CYTOCHROME C OXIDASE 6B)subunit 6b of cytochrome c oxidaseS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.798.4GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
5.298.2GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
5.098.1GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
5.098.1GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
4.798.0GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
4.597.8GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
4.397.7GSM153927ahg1-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
4.397.7GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
4.297.6GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.211e-38161At1g47260841129GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.C.G.S.X.
0.014e-136At5g43810834403ZLL (ZWILLE)Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.C.G.S.X.
0.024e-136At5g04400830319anac077 (Arabidopsis NAC domain containing protein 77)F:DNA binding;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBMC.G.S.X.
0.024e-136At5g47750834826D6PKL2 (D6 PROTEIN KINASE LIKE 2)F:kinase activity;P:protein amino acid phosphorylation;C:nucleolus, nucleus, cytoplasm;MOPFBVAC.G.S.X.
0.024e-136At3g47440823898TIP5Encodes AtTIP5;1, functions as water and urea channels in pollen.C.G.S.X.
0.034e-136At1g80940844434unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.024e-136At1g02650837951DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding, binding;P:protein folding;C:cellular_component unknown;PMFOBC.G.S.X.
0.012e+034At5g04560830335DME (DEMETER)Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-344Glycine maxGmaAffx.92081.1.S1_atCF807806--1e-3At1g47420-C.G.S.X.
0.118e-444Hordeum vulgareContig4905_s_atContig4905--2e-3At1g47420-C.G.S.X.
0.077e-136Oryza sativaOs04g0418000AK106155.1-Conserved hypothetical protein6e-1At1g47420-C.G.S.X.
0.114e-859Populus trichocarpaPtp.1909.1.A1_atCV269232hypothetical protein-3e-8At1g47420-C.G.S.X.
0.112e-344Triticum aestivumTa.1834.2.A1_atBQ161474--1e-3At1g47420-C.G.S.X.
0.158e-1579Vitis vinifera1608146_atCF415273hypothetical protein LOC100253931-3e-14At1g47420-C.G.S.X.
0.102e-446Zea maysZm.1996.1.S1_atCK347826hypothetical protein LOC100276029-6e-4At1g47420-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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