Gene omics information

Query gene ID At1g47240
Gene name NRAMP2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g47240841127NRAMP2Member of the NRAMP2 gene family of metal ion transporters.S.X.H.G.
0.4558.3At5g62600836381transportin-SR-relatedF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOBS.X.H.G.
0.3541.6At4g38500830007unknown proteinF:unknown;P:unknown;C:Golgi apparatus;POBAS.X.H.G.
0.3439.8At5g23390832403unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PS.X.H.G.
0.3439.8At1g33230840217-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOS.X.H.G.
0.3338.1At1g78800844216glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMFS.X.H.G.
0.3338.1At5g11040830971-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.3338.1At5g11030830970ALF4 (ABERRANT LATERAL ROOT FORMATION 4)alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.S.X.H.G.
0.3133.8At3g12680820448HUA1 (ENHANCER OF AG-4 1)Member of the floral homeotic AGAMOUS pathway.S.X.H.G.
0.3032.1At5g24360832507IRE1-1 (INOSITOL REQUIRING 1-1)F:endoribonuclease activity, producing 5'-phosphomonoesters, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MPOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
101.499.9GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
69.699.9GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.699.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.099.7GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
27.099.7GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.699.7GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
25.499.6GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
23.599.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
23.099.6GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
21.999.6GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.323e-65250At2g23150816847NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.211e-1585At5g67330836868ATNRAMP4Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.172e-1067At4g18790827613NRAMP5member of Nramp2 familyC.G.S.X.
0.013e-344At5g03670831763unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBC.G.S.X.
0.013e-344At5g17760831644AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAVC.G.S.X.
0.013e-344At1g33240840218AT-GTL1 (GT2-LIKE 1)Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.C.G.S.X.
0.021e-242At5g58010835913basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.262e-24115Glycine maxGmaAffx.46439.1.S1_atBE806279--5e-25At1g47240NRAMP2C.G.S.X.
0.022e-344Hordeum vulgareContig24413_atContig24413--1e+1At5g23411unknown proteinC.G.S.X.
0.171e-759Oryza sativaOs12g0581600AK071485.1-Integral membrane protein7e-8At1g47240NRAMP2C.G.S.X.
0.602e-67258Populus trichocarpaPtpAffx.202040.1.S1_atpmrna4065nramp transporter-5e-119At1g47240NRAMP2C.G.S.X.
0.061e-861Triticum aestivumTa.13247.1.S1_a_atCK198318--9e-9At1g47240NRAMP2C.G.S.X.
0.138e-23107Vitis vinifera1617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2C.G.S.X.
0.064e-446Zea maysZm.13647.1.S1_atAY107242.1metal transporter Nramp3-3e-12At5g67330ATNRAMP4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
NGO:0006875Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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