CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g46912

Gene name F-box family protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At1g46912 841119 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.87 93.5 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.80 89.8 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.78 88.6 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At2g01500 814678 PFS2 (PRETTY FEW SEEDS 2) PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. S.X. H.G.
0.75 86.9 At2g24410 816977 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
386.6 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
382.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
377.7 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
342.9 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
330.2 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
318.2 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
296.3 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
280.9 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
268.5 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
262.2 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.41 2e-25 117 At1g46840 841118 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.42 2e-21 103 At1g46984 841120 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.03 3e-5 50 At1g32420 840136 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.06 1e-4 48 At5g42430 834249 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 1e-4 48 At5g62060 836326 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.05 1e-4 48 At2g02660 814795 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM C.G. S.X.
0.05 2e-3 44 At1g31080 839994 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.05 8e-3 42 At1g53550 841790 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 3e-2 40 At5g52620 835339 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Glycine max GmaAffx.27577.1.S1_at BI424688 - - 9e-1 At5g01740 - C.G. S.X.
0.03 9e-1 34 Hordeum vulgare Contig3396_s_at Contig3396 - - 1e+0 At5g18540 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os03g0652466 9631.m04347 - - 1e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.201957.1.S1_x_at pmrna3904 hypothetical protein - 6e-24 Atcg00540 - C.G. S.X.
0.02 8e+0 32 Triticum aestivum Ta.8172.1.A1_at BQ161529 - - 2e-1 At5g52975 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1618369_at CF207527 - - 1e+1 Atcg01040 - C.G. S.X.
0.03 8e-1 34 Zea mays ZmAffx.593.1.A1_at AI715021 - - 2e-1 At3g28630 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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