CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g45616

Gene name AtRLP6 (Receptor Like Protein 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g45616 841101 AtRLP6 (Receptor Like Protein 6) F:protein binding;P:signal transduction, defense response;C:membrane;PMOBFAV S.X. H.G.
0.22 17.5 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO S.X. H.G.
0.22 17.5 At5g26620 832728 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.13 5.8 At1g09410 837463 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.13 5.8 At2g34580 818022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV S.X. H.G.
0.11 4.1 At2g07686 3768051 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
331.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
292.2 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
291.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
274.9 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
257.8 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
249.3 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
244.5 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
239.0 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
237.6 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
237.5 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.55 1e-75 286 At1g47890 841206 AtRLP7 (Receptor Like Protein 7) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV C.G. S.X.
0.06 2e-12 75 At5g27060 832764 AtRLP53 (Receptor Like Protein 53) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.13 2e-12 75 At3g11080 820279 AtRLP35 (Receptor Like Protein 35) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV C.G. S.X.
0.08 1e-10 69 At3g05650 819732 AtRLP32 (Receptor Like Protein 32) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.10 2e-9 65 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV C.G. S.X.
0.05 3e-8 61 At3g28890 822523 AtRLP43 (Receptor Like Protein 43) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV C.G. S.X.
0.10 4e-7 57 At2g15080 815997 AtRLP19 (Receptor Like Protein 19) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.08 6e-6 54 At1g47885 841205 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cellular_component unknown;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max GmaAffx.52108.1.S1_at BQ474028 - - 2e-1 At5g39870 unknown protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare rbags15h21_at rbags15h21 - - 3e+0 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) C.G. S.X.
0.01 3e+0 36 Oryza sativa OsAffx.20801.1.S1_at - - - 0 C.G. S.X.
0.02 5e-1 38 Populus trichocarpa PtpAffx.213672.1.S1_x_at pmrna26696 hypothetical protein - 4e-1 At4g20270 BAM3 (BARELY ANY MERISTEM 3) C.G. S.X.
0.01 6e+0 34 Triticum aestivum TaAffx.54413.1.S1_x_at CA681891 Cinnamoyl-CoA reductase - 7e-2 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1622513_at CD009879 hypothetical LOC100255712 - 6e+0 At5g05760 SYP31 (SYNTAXIN OF PLANTS 31) C.G. S.X.
0.01 3e+0 34 Zea mays Zm.19102.1.S1_at CO518558 hypothetical protein LOC100217305 - 2e-14 At1g68640 PAN (PERIANTHIA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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