Gene omics information

Query gene ID At1g45230
Gene name defective chloroplasts and leaves protein-related / DCL protein-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g45230841096defective chloroplasts and leaves protein-related / DCL protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBS.X.H.G.
0.4457.2At2g44870819096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBS.X.H.G.
0.3643.6At1g53120841746RNA-binding S4 domain-containing proteinF:RNA binding;P:biological_process unknown;C:chloroplast;BOPMS.X.H.G.
0.3338.1At4g14910827149imidazoleglycerol-phosphate dehydratase, putativeF:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPMS.X.H.G.
0.3235.7At3g61770825350-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPS.X.H.G.
0.2930.3At1g44920841058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAOS.X.H.G.
0.2830.3At1g22700838876tetratricopeptide repeat (TPR)-containing proteinEncodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.S.X.H.G.
0.2830.3At4g35450829697AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.S.X.H.G.
0.2624.4At1g11750837719CLPP6One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).S.X.H.G.
0.2522.6At1g12410837797CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.699.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
20.499.6E-MEXP-1797-raw-cel-1669767985
20.099.6E-MEXP-1797-raw-cel-1669768066
18.799.5E-MEXP-1797-raw-cel-1669768030
14.699.4E-MEXP-1797-raw-cel-1669767994
14.699.4E-MEXP-1797-raw-cel-1669768021
14.299.4E-MEXP-1797-raw-cel-1669768012
13.399.4E-MEXP-1797-raw-cel-1669768084
12.599.3E-MEXP-1797-raw-cel-1669768075
10.799.2E-MEXP-1797-raw-cel-1669768003
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-344At5g55040835595DNA bindingF:DNA binding;P:biological_process unknown;C:mitochondrion;MOFPBVAC.G.S.X.
0.041e-344At4g21610828248LOL2 (LSD ONE LIKE 2)Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.C.G.S.X.
0.011e-344At3g25690822157CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)actin binding protein required for normal chloroplast positioningC.G.S.X.
0.031e-344At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFC.G.S.X.
0.021e-344At2g39830818570DAR2 (DA1-RELATED PROTEIN 2)F:zinc ion binding;P:unknown;C:chloroplast;MOPFBC.G.S.X.
0.041e-344At2g33510817916protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBC.G.S.X.
0.031e-344At1g73010843632phosphataseF:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBFC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.292e-31137Glycine maxGma.7276.1.S1_atCD394605--2e-31At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedC.G.S.X.
0.042e-446Hordeum vulgareEBro08_SQ003_C15_atEBro08_SQ003_C15--2e-2At3g21850ASK9 (ARABIDOPSIS SKP1-LIKE 9)C.G.S.X.
0.067e-756Oryza sativaOs02g0766000AK067075.1-DCL protein, chloroplast precursor (Defectivechloroplasts and leaves protein)6e-7At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedC.G.S.X.
0.184e-2099Populus trichocarpaPtpAffx.99473.1.S1_a_atCV266347hypothetical protein-4e-20At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedC.G.S.X.
0.129e-548Triticum aestivumTaAffx.98918.1.A1_atCK215441--8e-5At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedC.G.S.X.
0.281e-1375Vitis vinifera1612992_atCB343071--3e-13At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedC.G.S.X.
0.039e-340Zea maysZm.7673.1.A1_atBG320556hypothetical protein LOC100276580-2e-18At3g24506unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage