CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g44800

Gene name nodulin MtN21 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.43 55.3 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO S.X. H.G.
0.33 38.1 At1g31050 839991 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.25 22.6 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV S.X. H.G.
0.17 10.2 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
111.9 99.9 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
91.4 99.9 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.4 99.9 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
67.0 99.8 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
66.8 99.8 GSM184495 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
63.9 99.8 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
61.7 99.8 GSM184506 Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
59.4 99.8 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.5 99.8 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.9 99.8 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 2e-50 200 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF C.G. S.X.
0.14 9e-6 52 At1g21890 838791 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAM C.G. S.X.
0.01 4e-2 40 At3g01370 821288 ATCFM2 (CRM FAMILY MEMBER 2) Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing. C.G. S.X.
0.02 1e-1 38 At2g37460 818323 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF C.G. S.X.
0.01 6e-1 36 At1g02910 839350 LPA1 (LOW PSII ACCUMULATION1) Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. C.G. S.X.
0.02 2e+0 34 At5g61030 836224 GR-RBP3 (glycine-rich RNA-binding protein 3) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. C.G. S.X.
0.02 2e+0 34 At5g01090 831840 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:endomembrane system;PB C.G. S.X.
0.05 2e+0 34 At4g08290 826383 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAMF C.G. S.X.
0.02 2e+0 34 At4g39810 830140 exonuclease/ nucleic acid binding F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-2 42 Glycine max Gma.6717.1.S1_at BU763455 - - 9e-3 At1g44800 nodulin MtN21 family protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare rbaal27b24_at rbaal27b24 - - 4e-15 At2g37620 ACT1 (ACTIN 1) C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.3479.1.S1_x_at - - - 0 C.G. S.X.
0.07 9e-10 65 Populus trichocarpa Ptp.3670.1.S1_at CV273865 hypothetical protein - 5e-11 At4g08300 nodulin MtN21 family protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.121233.1.S1_at CA682415 - - 4e+0 At4g03945 enzyme inhibitor/ pectinesterase C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1621802_at CA813116 hypothetical protein LOC100257071 - 5e-12 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.02 9e-1 34 Zea mays Zm.18668.1.A1_at CO519508 hypothetical protein LOC100272378 - 4e-4 At1g79250 AGC1.7 (AGC KINASE 1.7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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