CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g43630

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At1g43630 840947 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
1.00 100.0 At4g33390 829476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.73 85.5 At3g46750 823828 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.67 81.6 At1g68090 843137 ANN5 Encodes a calcium-binding protein annexin (AnnAt5). S.X. H.G.
0.67 81.6 At2g33670 817932 MLO5 (MILDEW RESISTANCE LOCUS O 5) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
542.0 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
328.3 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
303.0 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
185.4 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
146.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
146.6 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
129.4 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
117.8 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.7 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
108.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-11 69 At1g18740 838456 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PA C.G. S.X.
0.17 1e-8 61 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 4e-2 40 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 2e-1 38 At5g40340 834032 PWWP domain-containing protein F:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVA C.G. S.X.
0.02 2e-1 38 At3g53120 824478 VPS37-1 F:unknown;P:unknown;C:ESCRT I complex;MOPFB C.G. S.X.
0.01 2e-1 38 At1g10385 837578 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;MFPBO C.G. S.X.
0.02 6e-1 36 At3g28230 822449 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB C.G. S.X.
0.01 2e+0 34 At5g51340 835208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max GmaAffx.20522.1.S1_at BE440570 - - 2e-5 At2g27900 unknown protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HA30O17r_s_at HA30O17r - - 9e-10 At4g33865 40S ribosomal protein S29 (RPS29C) C.G. S.X.
0.02 5e+0 34 Oryza sativa Os03g0780200 AK107920.1 - Conserved hypothetical protein 8e-2 At5g17130 cysteine-type peptidase C.G. S.X.
0.03 4e-3 44 Populus trichocarpa PtpAffx.37324.1.A1_s_at CV256401 hypothetical protein - 1e-1 At3g14000 ATBRXL2 C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.111232.1.S1_at CA645247 - - 2e-1 At2g34120 unknown protein C.G. S.X.
0.02 5e-2 38 Vitis vinifera 1621640_at AY427079.1 hypothetical protein LOC100264978 - 2e-1 At1g12220 RPS5 (RESISTANT TO P. SYRINGAE 5) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.12627.1.S1_at CA831553 - - 1e+0 At1g43630 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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