Gene omics information

Query gene ID At1g42990
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At1g42990840897ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription.S.X.H.G.
0.6378.1At3g59080825077aspartyl protease family proteinF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOS.X.H.G.
0.6075.7At5g47910834842RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.S.X.H.G.
0.5570.6At1g07135837224glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAS.X.H.G.
0.5570.6At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4558.3At2g05940815147protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.4457.2At1g11050837646protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4457.2At2g26190817159calmodulin-binding family proteinF:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOBS.X.H.G.
0.4355.3At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.4355.3At5g64660836587U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFVS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
100.899.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
100.699.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
92.199.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
83.399.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
42.199.8GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
36.099.7GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
34.999.7GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.037e-342At3g49470824109NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPAVBC.G.S.X.
0.047e-342At3g11100820281transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;POMFBAC.G.S.X.
0.017e-342At1g33170840213dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:unknown;PBOAMC.G.S.X.
0.037e-342At1g63980842701D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVAC.G.S.X.
0.027e-342At1g75150843852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.023e-240At5g61490836270-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.033e-240At5g49100834969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPVC.G.S.X.
0.023e-240At4g09060826484unknown proteinF:unknown;P:unknown;C:membrane;MOFBPAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-1479Glycine maxGmaAffx.3568.1.S1_atBU964411bZIP transcription factor bZIP68-4e-14At1g42990ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)C.G.S.X.
0.055e-238Hordeum vulgareContig9431_atContig9431--1e-1At1g42990ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)C.G.S.X.
0.036e-240Oryza sativaOs07g0281700AK111275.1-Ferredoxin domain containing protein5e-3At4g17940bindingC.G.S.X.
0.061e-26121Populus trichocarpaPtpAffx.66318.1.S1_a_atCK091790hypothetical protein-1e-26At1g42990ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)C.G.S.X.
0.031e-138Triticum aestivumTa.6286.1.S1_atCD896026--1e-4At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)C.G.S.X.
0.052e-22105Vitis vinifera1622559_atCF606481hypothetical LOC100244512-9e-22At1g42990ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)C.G.S.X.
0.037e-134Zea maysZm.6181.1.A1_atAY104864.1bZIP transcription factor protein-6e-1At5g35110unknown proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0030968The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage