CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g36920

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At1g36920 840600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.71 84.2 At2g14130 815899 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.67 81.6 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At1g19260 838509 hAT dimerisation domain-containing protein F:protein dimerization activity;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.53 68.6 At1g33460 3766895 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.44 57.2 At2g02210 3767940 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.44 57.2 At3g32900 823050 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
278.1 100.0 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
276.4 100.0 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
238.3 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
198.1 100.0 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
196.9 100.0 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
191.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
174.2 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
157.0 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
144.0 99.9 E-ATMX-31-raw-cel-1516947916
137.0 99.9 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At5g39590 833955 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPF C.G. S.X.
0.04 3e-1 36 At3g07640 819955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 34 At5g44530 834480 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAM C.G. S.X.
0.02 1e+0 34 At4g33440 829481 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.02 1e+0 34 At4g09930 826582 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.01 1e+0 34 At4g00020 828230 protein binding / single-stranded DNA binding Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development. C.G. S.X.
0.02 1e+0 34 At3g50090 824171 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOB C.G. S.X.
0.01 1e+0 34 At3g06670 819852 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 1e+0 34 At1g67650 843090 7S RNA binding F:7S RNA binding;P:SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle;MFOBPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.14073.1.S1_at BI967773 - - 1e+0 At3g16310 mitotic phosphoprotein N' end (MPPN) family protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HV05F02u_s_at HV05F02u - - 9e-1 At1g36920 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os10g0107200 9638.m00082 - - 2e+0 At1g52480 C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.26900.2.S1_at CV264694 hypothetical protein - 3e+0 At3g16070 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.52857.1.S1_at CA699747 - - 1e+0 At1g36920 unknown protein C.G. S.X.
0.04 2e-3 42 Vitis vinifera 1612105_at CF415846 hypothetical protein LOC100263066 - 4e-19 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.2572.1.A1_at BG842171 - - 4e+0 At5g10310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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