CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g35660

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g35660 840468 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFB S.X. H.G.
0.34 39.8 At5g47400 834787 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;MPO S.X. H.G.
0.31 33.8 At4g01280 827903 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:unknown;POM S.X. H.G.
0.29 30.3 At4g00790 - - - S.X. H.G.
0.29 30.3 At5g20610 832183 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAV S.X. H.G.
0.28 30.3 At2g44950 819104 HUB1 (HISTONE MONO-UBIQUITINATION 1) The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. S.X. H.G.
0.27 26.2 At5g19420 832062 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAV S.X. H.G.
0.26 24.4 At3g17740 821042 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.26 24.4 At2g41020 818702 WW domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.26 24.4 At4g01020 826439 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related F:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
115.3 99.9 GSM131454 AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
83.7 99.9 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
75.9 99.9 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
71.4 99.9 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
61.4 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.9 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.7 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.8 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
47.8 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
47.6 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-3 44 At3g17100 820967 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM C.G. S.X.
0.01 1e-1 40 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 4e-1 38 At5g40910 834092 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 4e-1 38 At4g13990 827035 exostosin family protein F:catalytic activity;P:biological_process unknown;C:cell wall, membrane;POM C.G. S.X.
0.00 4e-1 38 At3g19050 821439 POK2 (PHRAGMOPLAST ORIENTING KINESIN 2) PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls. C.G. S.X.
0.00 2e+0 36 At5g15680 831422 binding F:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPO C.G. S.X.
0.01 2e+0 36 At5g53440 835425 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA C.G. S.X.
0.01 2e+0 36 At4g39750 830131 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Glycine max Gma.2215.1.S1_at BU546695 - - 2e+0 At5g63595 FLS4 (FLAVONOL SYNTHASE 4) C.G. S.X.
0.01 8e-1 36 Hordeum vulgare HV_CEa0014D10r2_s_at HV_CEa0014D10r2 - - 7e+0 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative C.G. S.X.
0.05 3e-25 119 Oryza sativa Os01g0873800 AK068140.1 - TPR-like domain containing protein 2e-25 At1g35660 unknown protein C.G. S.X.
0.13 8e-19 97 Populus trichocarpa PtpAffx.212378.1.S1_at pmrna24256 hypothetical protein - 6e-19 At1g35660 unknown protein C.G. S.X.
0.01 1e-1 40 Triticum aestivum TaAffx.106139.1.S1_at CA716434 - - 2e+0 At1g21970 LEC1 (LEAFY COTYLEDON 1) C.G. S.X.
0.02 1e-1 38 Vitis vinifera 1612814_at CD721331 - - 9e-2 At1g35660 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.6150.1.A1_at CF635417 nucleic acid binding protein - 2e-1 At1g49600 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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