Gene omics information

Query gene ID At1g35330
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g35330840422zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
0.5773.8At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAS.X.H.G.
0.5065.3At1g71692843497AGL12 (AGAMOUS-LIKE 12)Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.S.X.H.G.
0.4457.2At1g79320844270AtMC6 (metacaspase 6)F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFPAS.X.H.G.
0.3235.7At1g73280843662scpl3 (serine carboxypeptidase-like 3)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
0.1710.2At5g16900831553leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
166.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
134.699.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.699.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.899.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.599.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
104.199.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
98.999.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.399.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.899.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.173e-36153At4g09120826490zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.153e-24113At4g09110826489zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.172e-1997At4g09130826491zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.048e-652At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVC.G.S.X.
0.068e-652At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.C.G.S.X.
0.088e-652At1g22500838856zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.033e-240At1g72200843552zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.011e-138At5g56200835719zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBVC.G.S.X.
0.041e-138At3g05200819684ATL6Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxHgAffx.22827.1.S1_atCD748440--1e+0At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.031e-344Hordeum vulgareContig11929_atContig11929--4e-7At5g64500membrane protein-relatedC.G.S.X.
0.032e+132Oryza sativaOs08g04717009636.m03692--3e-1At2g18610unknown proteinC.G.S.X.
0.037e-136Populus trichocarpaPtpAffx.204540.1.S1_atpmrna8911hypothetical protein-2e-2At4g38670pathogenesis-related thaumatin family proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.111746.1.S1_s_atCA659066--4e+0At5g62750unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1621075_atBQ799036hypothetical protein LOC100255759-5e+0At3g50920phosphatidic acid phosphatase-related / PAP2-relatedC.G.S.X.
0.023e+032Zea maysZm.2658.1.A1_atCK348010--3e-2At4g15840protein bindingC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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