CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g35250

Gene name thioesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA S.X. H.G.
0.76 87.4 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.70 83.5 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.67 81.6 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.67 81.6 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.67 81.6 At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO S.X. H.G.
0.67 81.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.63 78.1 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.61 76.7 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.6 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
54.0 99.8 GSM131575 ATGE_99_C GSE5631 AtGenExpress: Developmental series (roots)
50.4 99.8 GSM131574 ATGE_99_B GSE5631 AtGenExpress: Developmental series (roots)
50.1 99.8 GSM131573 ATGE_99_A GSE5631 AtGenExpress: Developmental series (roots)
41.5 99.8 GSM291023 root - 08% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
36.5 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.7 99.7 GSM133717 Urwin_A-1-Urwin-Con_SLD GSE5724 Plant gene expression associated with susceptibility to nematodes
33.8 99.7 GSM142670 SF002_ATH1_A8-Fille-ANGR4-12+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
33.7 99.7 GSM131569 ATGE_95_C GSE5631 AtGenExpress: Developmental series (roots)
33.6 99.7 GSM131306 AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 4e-136 484 At1g35290 840418 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPA C.G. S.X.
0.64 7e-107 387 At1g68260 843155 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPA C.G. S.X.
0.64 2e-70 266 At1g68280 843157 thioesterase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPA C.G. S.X.
0.02 7e-2 38 At1g79720 844311 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PFMOB C.G. S.X.
0.02 1e+0 34 At3g02630 820773 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast, chloroplast stroma;PBOM C.G. S.X.
0.03 4e+0 32 At5g46430 834686 60S ribosomal protein L32 (RPL32B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOPF C.G. S.X.
0.02 4e+0 32 At5g01340 831479 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-6 52 Glycine max GmaAffx.77773.1.S1_at AW394535 - - 2e-5 At1g68260 thioesterase family protein C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HVSMEf0011J16r2_at HVSMEf0011J16r2 - - 1e+0 At1g58100 TCP family transcription factor, putative C.G. S.X.
0.03 2e+0 34 Oryza sativa Os.26910.1.A1_at - - - 0 C.G. S.X.
0.17 2e-12 73 Populus trichocarpa PtpAffx.86742.1.S1_at DN492197 hypothetical protein - 2e-6 At1g68260 thioesterase family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.120214.1.S1_at BJ236251 - - 4e-1 At1g35250 thioesterase family protein C.G. S.X.
0.08 3e-4 44 Vitis vinifera 1606838_at CB972815 hypothetical protein LOC100268132 - 3e-2 At1g68280 thioesterase-related C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.997.1.S1_at AI857164 - - 3e+0 At5g25990 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage