Gene omics information

Query gene ID At1g35230
Gene name AGP5 (ARABINOGALACTAN-PROTEIN 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At1g35230840412AGP5 (ARABINOGALACTAN-PROTEIN 5)Encodes arabinogalactan-protein (AGP5).S.X.H.G.
0.5065.3At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseS.X.H.G.
0.5065.3At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.3948.4At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVS.X.H.G.
0.2930.3At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.2217.5At4g139003770199-F:unknown;P:unknown;C:unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
327.7100.0GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
265.3100.0GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
176.5100.0GSM269494mkk1/mkk2, no-treatment, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
97.999.9E-MEXP-807-raw-cel-1173273252
77.999.9E-MEXP-739-raw-cel-1099467267
76.399.9E-MEXP-739-raw-cel-1099467312
75.599.9E-MEXP-739-raw-cel-1099467249
75.199.9E-MEXP-739-raw-cel-1099467276
70.599.9E-ATMX-25-raw-cel-1441077500
70.399.9E-MEXP-739-raw-cel-1099467285
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.186e-1477At4g09030826482AGP10 (ARABINOGALACTAN PROTEIN 10)Encodes arabinogalactan protein (AGP10).C.G.S.X.
0.012e-136At4g31880829318-F:unknown;P:unknown;C:cytosol, chloroplast;MOFBPVAC.G.S.X.
0.022e-136At1g53720841810CYP59 (CYCLOPHILIN 59)Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis– trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.C.G.S.X.
0.032e-136At1g17330838304metal-dependent phosphohydrolase HD domain-containing protein-relatedF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOFAPVC.G.S.X.
0.028e-134At5g12410831116THUMP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.028e-134At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBC.G.S.X.
0.028e-134At2g34790818044MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAMC.G.S.X.
0.018e-134At2g31900817748XIFEncodes an novel myosin isoform.C.G.S.X.
0.048e-134At2g20260816545PSAE-2 (photosystem I subunit E-2)Encodes subunit E of photosystem I.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Glycine maxPsAffx.CL2335Contig1_atPsAffx.CL2335Contig1--1e-2At3g30845unknown proteinC.G.S.X.
0.042e+032Hordeum vulgareHD07P18r_atHD07P18r--3e+0At1g35230AGP5 (ARABINOGALACTAN-PROTEIN 5)C.G.S.X.
0.032e+034Oryza sativaOs04g0518600AK063087.1-Hypothetical protein5e+0At5g13410immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinC.G.S.X.
0.041e+034Populus trichocarpaPtpAffx.214353.1.S1_atpmrna27915hypothetical protein-1e+0At3g14395unknown proteinC.G.S.X.
0.042e-136Triticum aestivumTaAffx.105586.2.S1_atCA681851--3e-1At5g11930glutaredoxin family proteinC.G.S.X.
0.034e+030Vitis vinifera1622582_atCF513452hypothetical protein LOC100264542-3e-1At5g4562026S proteasome regulatory subunit, putative (RPN9)C.G.S.X.
0.033e-134Zea maysZm.5143.1.A1_atAY107731.1hypothetical protein LOC100276623-1e-1At1g74730unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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