CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g34670

Gene name AtMYB93 (myb domain protein 93)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g34670 840371 AtMYB93 (myb domain protein 93) Member of the R2R3 factor gene family. S.X. H.G.
0.87 93.5 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.86 93.1 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.75 86.9 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.74 86.1 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.72 84.8 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.67 81.6 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.67 81.6 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.60 75.7 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.3 99.9 E-MEXP-828-raw-cel-1156922987
86.9 99.9 E-MEXP-828-raw-cel-1156922923
86.7 99.9 E-MEXP-828-raw-cel-1156922944
83.0 99.9 E-MEXP-828-raw-cel-1156922968
80.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
80.7 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
77.1 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
71.1 99.9 E-MEXP-828-raw-cel-1156922829
68.7 99.9 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
67.4 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 7e-25 115 At3g02940 821178 MYB107 (myb domain protein 107) Encodes a putative transcription factor (MYB107). C.G. S.X.
0.22 5e-23 109 At5g16770 831540 AtMYB9 (myb domain protein 9) Member of the R2R3 factor gene family. C.G. S.X.
0.08 4e-17 89 At4g05100 825855 AtMYB74 (myb domain protein 74) Member of the R2R3 factor gene family. C.G. S.X.
0.14 7e-16 85 At5g26660 832723 ATMYB86 (MYB DOMAIN PROTEIN 86) a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters. C.G. S.X.
0.21 3e-15 83 At5g10280 830892 ATMYB92 (MYB DOMAIN PROTEIN 92) Encodes a putative transcription factor (MYB92). C.G. S.X.
0.15 1e-14 81 At5g65230 836648 AtMYB53 (myb domain protein 53) Member of the R2R3 factor gene family. C.G. S.X.
0.12 4e-11 69 At4g21440 826916 ATMYB102 (ARABIDOPSIS MYB-LIKE 102) Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family. C.G. S.X.
0.05 2e-10 67 At3g62610 825435 ATMYB11 (MYB DOMAIN PROTEIN 11) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-5 50 Glycine max GmaAffx.83663.1.S1_at AW596799 MYB transcription factor MYB187 - 9e-52 At3g28910 MYB30 (MYB DOMAIN PROTEIN 30) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig17920_at Contig17920 - - 1e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) C.G. S.X.
0.17 1e-9 65 Oryza sativa OsAffx.12601.1.S1_at - - - 0 C.G. S.X.
0.39 6e-54 212 Populus trichocarpa PtpAffx.224475.1.S1_at pmrna43047 hypothetical protein - 5e-36 At5g10280 ATMYB92 (MYB DOMAIN PROTEIN 92) C.G. S.X.
0.08 4e-8 59 Triticum aestivum TaAffx.85627.1.S1_at CA621042 - - 8e-11 At5g10280 ATMYB92 (MYB DOMAIN PROTEIN 92) C.G. S.X.
0.09 2e-1 36 Vitis vinifera 1616094_at CF372451 MYBPA1 protein - 5e-8 At1g18570 MYB51 (MYB DOMAIN PROTEIN 51) C.G. S.X.
0.02 9e-1 34 Zea mays Zm.15884.1.A1_at BM498962 auxin induced protein - 1e+0 At4g27280 calcium-binding EF hand family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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