CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g34400

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.84 91.9 At1g34400 840342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At2g14010 815885 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.61 76.7 At4g08420 3770258 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.58 73.8 At3g42970 823353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At2g18530 816368 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVA S.X. H.G.
0.57 73.8 At3g55650 824731 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA S.X. H.G.
0.56 73.0 At3g20690 821616 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.56 73.0 At4g03850 3770317 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.56 73.0 At3g42730 823306 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.55 70.6 At1g09220 837442 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cytosolic ribosome;POMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
378.1 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
339.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
284.9 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
276.1 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
258.1 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
245.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
230.1 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
222.4 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
220.9 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
196.2 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 4e-30 131 At3g42130 823185 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV C.G. S.X.
0.06 1e-27 123 At4g08760 826445 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.34 1e-27 123 At2g03570 814886 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.39 2e-16 85 At2g10920 815556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.21 8e-10 63 At4g39260 830082 GR-RBP8 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). C.G. S.X.
0.05 1e-2 40 At1g61255 842419 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 36 Glycine max PsAffx.CL223Contig1_at PsAffx.CL223Contig1 - - 3e-1 At2g27390 proline-rich family protein C.G. S.X.
0.04 2e-2 38 Hordeum vulgare EBro04_SQ002_K02_at EBro04_SQ002_K02 - - 5e-15 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.04 3e-1 36 Oryza sativa Os06g0679600 9634.m04531 - - 6e-5 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.16061.2.S1_at CX184035 hypothetical protein - 9e-11 At1g61255 - C.G. S.X.
0.04 7e-1 34 Triticum aestivum Ta.13925.1.S1_at BQ744106 - - 1e+0 At1g34400 unknown protein C.G. S.X.
0.03 8e-1 32 Vitis vinifera 1620366_at CB006256 hypothetical protein LOC100242551 - 5e+0 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) C.G. S.X.
0.04 3e-1 34 Zea mays Zm.13450.1.S1_at AY109219.1 hypothetical protein LOC100278283 - 5e-3 At2g23310 ATRER1C1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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