CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g33610

Gene name protein binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At1g33610 840255 protein binding F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV S.X. H.G.
0.76 87.4 At3g45530 823694 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.64 78.9 At1g66450 842963 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.64 78.9 At3g07000 819885 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.64 78.9 At2g27010 817243 CYP705A9 member of CYP705A S.X. H.G.
0.64 78.9 At4g13130 826927 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMO S.X. H.G.
0.64 78.9 At5g59930 836115 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF S.X. H.G.
0.53 68.6 At3g46720 823825 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.52 67.4 At4g11550 826759 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.39 48.4 At1g55390 841986 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
315.2 100.0 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
179.2 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
172.0 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
140.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.3 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
119.7 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
110.0 99.9 GSM218588 Protoplasted root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
109.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.0 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 4e-93 343 At1g33590 840253 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:cell wall, chloroplast, plant-type cell wall;PMBOFAV C.G. S.X.
0.37 4e-47 190 At1g33670 840258 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA C.G. S.X.
0.34 8e-39 163 At1g33600 840254 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAV C.G. S.X.
0.34 2e-30 135 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.01 2e-2 42 At1g67210 843041 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFV C.G. S.X.
0.01 3e-1 38 At5g02880 831758 UPL4 encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
0.01 3e-1 38 At1g50370 841459 serine/threonine protein phosphatase, putative F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAV C.G. S.X.
0.01 3e-1 38 At1g47790 841193 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max GmaAffx.18518.1.S1_at BI700329 - - 2e+0 At3g14700 - C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig17541_at Contig17541 - - 5e-1 At1g60995 unknown protein C.G. S.X.
0.01 7e-1 38 Oryza sativa Os01g0694000 AK064608.1 - Protein kinase domain containing protein 3e-2 At4g26540 kinase C.G. S.X.
0.05 5e-7 58 Populus trichocarpa PtpAffx.409.1.S1_at BP930762 - - 4e-6 At1g33590 disease resistance protein-related / LRR protein-related C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.85001.1.S1_at CA621979 - - 1e-43 At4g29040 RPT2a (regulatory particle AAA-ATPase 2a) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1614057_s_at CF511817 hypothetical protein LOC100252442 - 5e-47 At4g22380 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
0.01 9e-3 42 Zea mays Zm.4298.1.A1_at CO527263 - - 7e-1 At4g08395 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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