CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g33600

Gene name leucine-rich repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At1g33600 840254 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAV S.X. H.G.
0.44 57.2 At1g33590 840253 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:cell wall, chloroplast, plant-type cell wall;PMBOFAV S.X. H.G.
0.32 35.7 At4g22690 828365 CYP706A1 member of CYP706A S.X. H.G.
0.20 14.4 At3g19010 821434 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:flavonol synthase activity, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM S.X. H.G.
0.20 14.4 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
70.0 99.9 E-NASC-76-raw-cel-1359879132
37.1 99.7 E-NASC-76-raw-cel-1359879106
34.4 99.7 E-NASC-76-raw-cel-1359879028
30.8 99.7 E-NASC-76-raw-cel-1359878951
25.4 99.6 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
24.6 99.6 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
24.3 99.6 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
23.1 99.6 GSM131119 AtGen_B-5_1-5-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
22.9 99.6 E-MEXP-1443-raw-cel-1581869745
22.0 99.6 E-MEXP-739-raw-cel-1099467240
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 1e-138 494 At1g33590 840253 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:cell wall, chloroplast, plant-type cell wall;PMBOFAV C.G. S.X.
0.42 8e-47 188 At1g33670 840258 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA C.G. S.X.
0.34 5e-39 163 At1g33610 840255 protein binding F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV C.G. S.X.
0.37 2e-38 161 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.01 1e-2 42 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV C.G. S.X.
0.01 2e-1 38 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 7e-1 36 At5g47070 834753 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 7e-1 36 At4g29800 829102 PLP8 (PATATIN-LIKE PROTEIN 8) F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM C.G. S.X.
0.01 7e-1 36 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 36 Glycine max GmaAffx.82443.1.S1_at BM188482 - - 8e-1 At1g33600 leucine-rich repeat family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig23655_at Contig23655 - - 5e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.02 6e-3 44 Oryza sativa OsAffx.15975.1.S1_at - - - 0 C.G. S.X.
0.06 2e-2 42 Populus trichocarpa PtpAffx.409.1.S1_at BP930762 - - 4e-6 At1g33590 disease resistance protein-related / LRR protein-related C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.112988.1.S1_at CA619184 - - 4e+0 At2g24205 - C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1617199_at CB003856 - - 1e-23 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.8775.2.A1_at AI065673 - - 9e-1 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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