Gene omics information

Query gene ID At1g33390
Gene name helicase domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g33390840232helicase domain-containing proteinF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVS.X.H.G.
0.4862.5At1g72320843564APUM23 (Arabidopsis Pumilio 23)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.3948.4At4g28200828935-F:molecular_function unknown;P:RNA processing;C:intracellular;FMOPS.X.H.G.
0.3338.1At3g57660824935NRPA1Encodes a subunit of RNA polymerase I (aka RNA polymerase A).S.X.H.G.
0.3338.1At3g62310825404RNA helicase, putativeF:RNA helicase activity, helicase activity, ATP binding, nucleic acid binding;P:unknown;C:nucleolus;MBOFVPAS.X.H.G.
0.3032.1At1g42440840848-F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPVS.X.H.G.
0.2930.3At5g64420836563DNA polymerase V familyF:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPVS.X.H.G.
0.2319.3At3g22310821800PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1)Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.S.X.H.G.
0.2217.5At5g27540832814MIRO1 (Miro-related GTP-ase 1)Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.S.X.H.G.
0.2115.8At3g10650820234-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
46.499.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
45.899.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.499.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.999.7GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
23.699.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.599.6GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
22.399.6GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
21.099.6GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
20.099.6GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
19.099.5GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-965At5g50950835168fumarate hydratase, putative / fumarase, putativeF:fumarate hydratase activity, catalytic activity;P:response to salt stress;C:mitochondrion;BOMAFPC.G.S.X.
0.018e-344At2g47250819338RNA helicase, putativeF:in 7 functions;P:unknown;C:membrane, chloroplast envelope;MBOFVPC.G.S.X.
0.011e-140At3g50040824166unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.015e-138At5g51150835189unknown proteinF:unknown;P:unknown;C:chloroplast;MFOPC.G.S.X.
0.015e-138At5g10370830901helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-relatedF:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVAC.G.S.X.
0.015e-138At5g66950836829catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.013e+036Glycine maxPsAffx.CL2116Contig1_atPsAffx.CL2116Contig1--2e-2At5g53180PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)C.G.S.X.
0.019e-136Hordeum vulgareContig19967_atContig19967--1e+0At2g33850unknown proteinC.G.S.X.
0.041e-1277Oryza sativaOs02g0736600AK121498.1--7e-13At1g33390helicase domain-containing proteinC.G.S.X.
0.012e-140Populus trichocarpaPtpAffx.201966.1.S1_atpmrna3924hypothetical protein-4e-22At1g09720kinase interacting family proteinC.G.S.X.
0.011e-140Triticum aestivumTa.13610.2.S1_atBJ223726--1e-2At2g40970myb family transcription factorC.G.S.X.
0.016e-136Vitis vinifera1619101_atCB975563hypothetical protein LOC100248761-4e-13At1g04850ubiquitin-associated (UBA)/TS-N domain-containing proteinC.G.S.X.
0.018e-136Zea maysZm.6246.2.A1_atAI677558--9e-7At2g22080unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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