CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g33050

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At1g33050 840200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP S.X. H.G.
0.69 82.9 At5g06560 830544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.65 79.6 At1g15880 838158 GOS11 (golgi snare 11) Golgi SNARE 11 protein (GOS11) S.X. H.G.
0.65 79.6 At4g35790 829733 ATPLDDELTA Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. S.X. H.G.
0.64 78.9 At5g45710 834610 RHA1 (ROOT HANDEDNESS 1) member of Heat Stress Transcription Factor (Hsf) family S.X. H.G.
0.64 78.9 At2g01450 814673 ATMPK17 member of MAP Kinase S.X. H.G.
0.64 78.9 At1g28960 839773 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPA S.X. H.G.
0.63 78.1 At5g22000 832260 RHF2A (RING-H2 GROUP F2A) encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. S.X. H.G.
0.63 78.1 At5g54310 835519 AGD5 (ARF-GAP domain 5) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. S.X. H.G.
0.62 77.3 At1g19110 838494 inter-alpha-trypsin inhibitor heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
104.3 99.9 GSM290758 root - 01% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
43.6 99.8 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
38.3 99.8 E-MEXP-285-raw-cel-440782725
37.0 99.7 E-MEXP-285-raw-cel-440782791
35.5 99.7 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
31.3 99.7 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
30.0 99.7 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
29.8 99.7 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
24.8 99.6 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
22.6 99.6 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 8e-20 99 At4g10470 826639 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At2g21790 816715 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair C.G. S.X.
0.01 3e-1 38 At1g19290 838511 - F:unknown;P:unknown;C:mitochondrion;POMFBA C.G. S.X.
0.02 1e+0 36 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.01 1e+0 36 At3g05450 819710 - F:unknown;P:unknown;C:cellular_component unknown;BOMFPV C.G. S.X.
0.01 1e+0 36 At3g55190 824685 esterase/lipase/thioesterase family protein F:catalytic activity;P:glycerol biosynthetic process;C:cellular_component unknown;BOPMFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max GmaAffx.92090.1.S1_s_at CF807815 - - 2e-2 At3g16170 acyl-activating enzyme 13 (AAE13) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig19196_at Contig19196 - - 1e+0 At3g01230 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os.23535.1.A1_at - - - 0 C.G. S.X.
0.01 1e+0 36 Populus trichocarpa PtpAffx.39357.1.S1_at CK095977 hypothetical protein - 3e-2 At3g21865 PEX22 (peroxin 22) C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.51600.1.S1_at CA723130 - - 3e+0 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1617674_at CF208997 hypothetical protein LOC100263480 - 5e-18 At5g16270 SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) C.G. S.X.
0.01 7e+0 32 Zea mays ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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