Gene omics information

Query gene ID At1g33030
Gene name O-methyltransferase family 2 protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At1g33030840198O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMS.X.H.G.
0.2522.6At3g28930822529AIG2 (AVRRPT2-INDUCED GENE 2)avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2S.X.H.G.
0.2522.6At4g11370826739RHA1AEncodes a putative RING-H2 finger protein RHA1a.S.X.H.G.
0.2522.6At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAS.X.H.G.
0.146.8At3g54150824582embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAS.X.H.G.
0.082.3At1g28190839713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
75.099.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
68.899.9GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
59.199.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
58.499.8GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
57.199.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
51.099.8GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
48.099.8GSM176880AWP_Control_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
45.799.8GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
42.599.8E-MEXP-711-raw-cel-1563002768
42.299.8GSM134386St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.095e-446At5g54160835504ATOMT1 (O-METHYLTRANSFERASE 1)A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferaseC.G.S.X.
0.022e-344At2g04280814966unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POC.G.S.X.
0.018e-342At5g57380835844VIN3 (VERNALIZATION INSENSITIVE 3)Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3). In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.C.G.S.X.
0.068e-342At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMC.G.S.X.
0.013e-240At5g43880834410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMBFC.G.S.X.
0.023e-240At5g44320834457eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeF:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFPC.G.S.X.
0.023e-240At1g21130838709O-methyltransferase, putativeF:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.082e-138Glycine maxGma.6550.3.S1_s_atAW234450--1e-33At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.023e-136Hordeum vulgareContig6271_atContig6271--4e-4At3g52120SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinC.G.S.X.
0.052e-242Oryza sativaOs04g0175900AK061551.1-0-methyltransferase (EC 2.1.1.6) (Fragment)1e-2At1g33030O-methyltransferase family 2 proteinC.G.S.X.
0.078e-1065Populus trichocarpaPtp.3197.1.S1_atCV243808caffeic acid 3-O-methyltransferase-3e-3At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.022e+034Triticum aestivumTaAffx.9158.1.S1_atCA610004--3e-1At5g07680ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)C.G.S.X.
0.064e-548Vitis vinifera1607475_s_atCD012393O-methyltransferase-like-6e-6At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.029e-134Zea maysZm.140.1.A1_atL14063.1Zea root preferential4-3e+0At1g33030O-methyltransferase family 2 proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009809The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis
00103Link to KaPPA-View 4Catechol, protocatechuate, 1,4-Dichlorobenzeneand pentachlorophenol degradation pathway



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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