Gene omics information

Query gene ID At1g33030
Gene name O-methyltransferase family 2 protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At1g33030840198O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMS.X.H.G.
0.2522.6At3g28930822529AIG2 (AVRRPT2-INDUCED GENE 2)avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2S.X.H.G.
0.2522.6At4g11370826739RHA1AEncodes a putative RING-H2 finger protein RHA1a.S.X.H.G.
0.2522.6At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAS.X.H.G.
0.146.8At3g54150824582embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAS.X.H.G.
0.082.3At1g28190839713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
75.099.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
68.899.9GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
59.199.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
58.499.8GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
57.199.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
51.099.8GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
48.099.8GSM176880AWP_Control_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
45.799.8GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
42.299.8GSM134386St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.095e-446At5g54160835504ATOMT1 (O-METHYLTRANSFERASE 1)A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferaseC.G.S.X.
0.022e-344At2g04280814966unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POC.G.S.X.
0.018e-342At5g57380835844VIN3 (VERNALIZATION INSENSITIVE 3)Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3). In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.C.G.S.X.
0.068e-342At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMC.G.S.X.
0.013e-240At5g43880834410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMBFC.G.S.X.
0.023e-240At5g44320834457eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeF:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFPC.G.S.X.
0.023e-240At1g21130838709O-methyltransferase, putativeF:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOMC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.082e-138Glycine maxGma.6550.3.S1_s_atAW234450--1e-33At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.023e-136Hordeum vulgareContig6271_atContig6271--4e-4At3g52120SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinC.G.S.X.
0.052e-242Oryza sativaOs04g0175900AK061551.1-0-methyltransferase (EC (Fragment)1e-2At1g33030O-methyltransferase family 2 proteinC.G.S.X.
0.078e-1065Populus trichocarpaPtp.3197.1.S1_atCV243808caffeic acid 3-O-methyltransferase-3e-3At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.022e+034Triticum aestivumTaAffx.9158.1.S1_atCA610004--3e-1At5g07680ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)C.G.S.X.
0.064e-548Vitis vinifera1607475_s_atCD012393O-methyltransferase-like-6e-6At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.029e-134Zea maysZm.140.1.A1_atL14063.1Zea root preferential4-3e+0At1g33030O-methyltransferase family 2 proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009809The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis
00103Link to KaPPA-View 4Catechol, protocatechuate, 1,4-Dichlorobenzeneand pentachlorophenol degradation pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage