CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g32780

Gene name alcohol dehydrogenase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At1g32780 840172 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV S.X. H.G.
0.71 84.2 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.67 81.6 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. S.X. H.G.
0.67 81.6 At1g15360 838105 SHN1 (SHINE 1) Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2. S.X. H.G.
0.60 75.7 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
0.60 75.7 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.53 68.6 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.53 68.6 At3g10570 820222 CYP77A6 member of CYP77A S.X. H.G.
0.18 11.4 At2g45600 819168 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
305.1 100.0 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
285.1 100.0 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
249.4 100.0 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
231.8 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
195.0 100.0 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
118.4 99.9 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
67.6 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
65.5 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
59.1 99.8 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
54.0 99.8 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 3e-9 63 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. C.G. S.X.
0.06 6e-7 56 At1g64710 842779 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.04 2e-4 48 At5g43940 834417 HOT5 (sensitive to hot temperatures 5) Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. C.G. S.X.
0.01 6e-1 36 At5g44780 834507 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA C.G. S.X.
0.02 6e-1 36 At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 36 At3g23740 821956 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;FPOMB C.G. S.X.
0.01 6e-1 36 At3g27670 822389 RST1 (RESURRECTION1) A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development. C.G. S.X.
0.01 2e+0 34 At5g62600 836381 transportin-SR-related F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Glycine max GmaAffx.84474.1.S1_at AW781649 - - 5e-2 At1g32780 alcohol dehydrogenase, putative C.G. S.X.
0.14 7e-5 48 Hordeum vulgare Contig10034_at Contig10034 - - 2e-4 At1g32780 alcohol dehydrogenase, putative C.G. S.X.
0.04 3e-1 38 Oryza sativa Os11g0210300 AK073964.1 - Alcohol dehydrogenase 1 2e-30 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.11 9e-7 56 Populus trichocarpa PtpAffx.224208.1.S1_at pmrna42537 hypothetical protein - 6e-7 At1g32780 alcohol dehydrogenase, putative C.G. S.X.
0.05 2e-1 38 Triticum aestivum Ta.10015.2.S1_at CD872946 - - 8e-1 At1g64710 alcohol dehydrogenase, putative C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620425_at CF414994 hypothetical protein LOC100260808 - 3e-10 At2g17850 - C.G. S.X.
0.04 1e-3 44 Zea mays Zm.18451.1.A1_at CO532342 hypothetical protein LOC100272357 - 1e-5 At1g64710 alcohol dehydrogenase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00010 Glycolysis / Gluconeogenesis
00071 Fatty acid metabolism
00350 Tyrosine metabolism
00980 Metabolism of xenobiotics by cytochrome P450
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage