CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g32750

Gene name HAF01

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At1g32750 840169 HAF01 This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. S.X. H.G.
0.57 73.8 At5g26610 832729 D111/G-patch domain-containing protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MOFPBVA S.X. H.G.
0.50 65.3 At1g32810 840175 - - S.X. H.G.
0.44 57.2 At3g50380 824202 - F:unknown;P:protein localization;C:mitochondrion;MFPO S.X. H.G.
0.33 38.1 At5g49580 835020 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.23 19.3 At5g24740 832543 - F:unknown;P:protein localization;C:unknown;MOFP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.4 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.8 99.7 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.9 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.4 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.2 99.5 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
16.1 99.5 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
15.6 99.5 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
14.8 99.4 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
14.5 99.4 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
12.8 99.3 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 0 1400 At3g19040 821437 HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth. C.G. S.X.
0.00 2e-1 40 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 2e-1 40 At5g22090 832270 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBV C.G. S.X.
0.01 2e-1 40 At3g14370 820658 WAG2 The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. C.G. S.X.
0.01 7e-1 38 At5g56920 835794 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 7e-1 38 At5g44450 834472 methyltransferase F:methyltransferase activity;P:biological_process unknown;C:chloroplast;MFOPB C.G. S.X.
0.00 7e-1 38 At4g21540 828239 SPHK1 (SPHINGOSINE KINASE 1) Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination. C.G. S.X.
0.01 7e-1 38 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 40 Glycine max GmaAffx.28678.1.S1_at BU544687 - - 2e-4 At5g01980 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e+0 36 Hordeum vulgare Contig5793_at Contig5793 - - 1e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.07 8e-27 125 Oryza sativa OsAffx.15914.1.S1_at - - - 0 C.G. S.X.
0.02 2e-2 44 Populus trichocarpa PtpAffx.49444.1.S1_s_at CX176178 histone acetyltransferase - 2e+0 At2g14750 APK (APS KINASE) C.G. S.X.
0.01 8e-1 38 Triticum aestivum TaAffx.93406.1.S1_at BJ211937 - - 4e-3 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) C.G. S.X.
0.01 2e-1 38 Vitis vinifera 1607734_at CF204253.1 - - 2e-2 At3g50550 unknown protein C.G. S.X.
0.01 5e-3 44 Zea mays Zm.10258.1.S1_at BM501769 S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ thiopurine S-methyltransferase - 2e-7 At2g43920 thiol methyltransferase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009294 The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03022 Basal transcription factors
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage