Gene omics information

Query gene ID At1g32750
Gene name HAF01
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At1g32750840169HAF01This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.S.X.H.G.
0.5773.8At5g26610832729D111/G-patch domain-containing proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MOFPBVAS.X.H.G.
0.4457.2At3g50380824202-F:unknown;P:protein localization;C:mitochondrion;MFPOS.X.H.G.
0.3338.1At5g49580835020DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.2319.3At5g24740832543-F:unknown;P:protein localization;C:unknown;MOFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.499.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
27.899.7GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.999.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.499.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
16.299.5GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
16.199.5GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
15.699.5GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
14.899.4GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
14.599.4GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7501400At3g19040821437HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2)Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth.C.G.S.X.
0.002e-140At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.012e-140At5g22090832270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBVC.G.S.X.
0.012e-140At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.C.G.S.X.
0.017e-138At5g56920835794-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.017e-138At5g44450834472methyltransferaseF:methyltransferase activity;P:biological_process unknown;C:chloroplast;MFOPBC.G.S.X.
0.007e-138At4g21540828239SPHK1 (SPHINGOSINE KINASE 1)Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.C.G.S.X.
0.017e-138At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.013e-140Glycine maxGmaAffx.28678.1.S1_atBU544687--2e-4At5g01980zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.011e+036Hordeum vulgareContig5793_atContig5793--1e-1At5g23950C2 domain-containing proteinC.G.S.X.
0.078e-27125Oryza sativaOsAffx.15914.1.S1_at---0C.G.S.X.
0.022e-244Populus trichocarpaPtpAffx.49444.1.S1_s_atCX176178histone acetyltransferase-2e+0At2g14750APK (APS KINASE)C.G.S.X.
0.018e-138Triticum aestivumTaAffx.93406.1.S1_atBJ211937--4e-3At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)C.G.S.X.
0.012e-138Vitis vinifera1607734_atCF204253.1--2e-2At3g50550unknown proteinC.G.S.X.
0.015e-344Zea maysZm.10258.1.S1_atBM501769S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ thiopurine S-methyltransferase-2e-7At2g43920thiol methyltransferase, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009294The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

03022Link to KEGG PATHWAYBasal transcription factors
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