CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g32450

Gene name NRT1.5 (NITRATE TRANSPORTER 1.5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. S.X. H.G.
0.61 76.7 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.57 73.8 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA S.X. H.G.
0.40 50.8 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. S.X. H.G.
0.29 30.3 At5g25160 832587 ZFP3 (ZINC FINGER PROTEIN 3) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
118.4 99.9 GSM291128 root - 08% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
81.5 99.9 GSM291118 root - 21% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
81.3 99.9 GSM290827 root - 04% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
57.9 99.8 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
56.5 99.8 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
43.6 99.8 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.9 99.8 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.0 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.9 99.7 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.6 99.7 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-20 101 At4g21680 828255 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF C.G. S.X.
0.17 7e-11 69 At5g19640 832084 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF C.G. S.X.
0.01 1e-2 42 At3g28810 822513 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMBFPVA C.G. S.X.
0.01 1e-2 42 At3g28820 822514 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMBFPVA C.G. S.X.
0.01 6e-2 40 At5g41820 834187 geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related F:protein binding, protein prenyltransferase activity;P:protein amino acid prenylation;C:unknown;MOPFBA C.G. S.X.
0.01 2e-1 38 At3g52160 824381 KCS15 (3-KETOACYL-COA SYNTHASE 15) Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 9e-1 36 At5g01180 831725 PTR5 (PEPTIDE TRANSPORTER 5) Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane. C.G. S.X.
0.01 9e-1 36 At5g53230 835404 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 9e-1 36 At4g06744 826147 leucine-rich repeat family protein / extensin family protein F:protein binding;P:biological_process unknown;C:unknown;POMBFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-7 57 Glycine max GmaAffx.84670.2.S1_at AW278758 - - 1e-7 At1g32450 NRT1.5 (NITRATE TRANSPORTER 1.5) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig4380_s_at Contig4380 - - 2e-2 At2g33450 50S ribosomal protein L28, chloroplast (CL28) C.G. S.X.
0.07 1e-4 50 Oryza sativa Os.9303.1.S1_at - - - 0 C.G. S.X.
0.35 3e-17 91 Populus trichocarpa PtpAffx.220036.1.S1_at pmrna36296 hypothetical protein - 2e-17 At1g32450 NRT1.5 (NITRATE TRANSPORTER 1.5) C.G. S.X.
0.05 6e-5 50 Triticum aestivum Ta.5485.1.S1_at BJ284070 - - 3e-5 At1g32450 NRT1.5 (NITRATE TRANSPORTER 1.5) C.G. S.X.
0.01 4e+0 32 Vitis vinifera 1618265_at CF403167 hypothetical protein LOC100244806 - 8e-86 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) C.G. S.X.
0.02 4e-4 46 Zea mays Zm.18103.1.A1_at AY187878.1 nitrate transporter - 8e-4 At1g32450 NRT1.5 (NITRATE TRANSPORTER 1.5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
X GO:0015706 The directed movement of nitrate into, out of, within or between cells.
X GO:0042128 The uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances.
C GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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