Gene omics information

Query gene ID At1g32360
Gene name zinc finger (CCCH-type) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g32360840128zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVAS.X.H.G.
0.8994.6At3g59640825133glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBFS.X.H.G.
0.8089.8At3g56820824849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.6075.7At4g38670830023pathogenesis-related thaumatin family proteinF:unknown;P:response to other organism;C:unknown;PMFBOVS.X.H.G.
0.3235.7At3g28700822500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
272.7100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
80.499.9GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.899.7GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
24.699.6GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
22.399.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.999.6GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
16.599.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.299.4GSM133779Lindsey_1-5_globular-basal_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.199.4GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
13.699.4GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.253e-27123At2g35430818109zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MPOFC.G.S.X.
0.011e-138At5g65710836700HSL2 (HAESA-Like 2)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.041e-138At3g19360821470zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPOFC.G.S.X.
0.021e-138At1g03440839504leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAC.G.S.X.
0.016e-136At4g36180829775leucine-rich repeat family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.012e+034At5g59500836069unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAFPMC.G.S.X.
0.022e+034At5g20030832125agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.012e+034At5g43880834410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMBFC.G.S.X.
0.022e+034At5g53700835451-F:unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.096e-1169Glycine maxGmaAffx.77996.1.S1_atBM143373--2e-11At1g32360zinc finger (CCCH-type) family proteinC.G.S.X.
0.168e-1167Hordeum vulgareContig11598_atContig11598--2e-10At1g32360zinc finger (CCCH-type) family proteinC.G.S.X.
0.071e-656Oryza sativaOs08g0159800NM_189068.1-Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein6e-7At1g32360zinc finger (CCCH-type) family proteinC.G.S.X.
0.332e-1791Populus trichocarpaPtpAffx.220060.1.S1_s_atpmrna36341hypothetical protein-1e-17At1g32360zinc finger (CCCH-type) family proteinC.G.S.X.
0.131e-1171Triticum aestivumTa.458.1.S1_atBF201579--1e-11At1g32360zinc finger (CCCH-type) family proteinC.G.S.X.
0.023e+032Vitis vinifera1615192_x_atCF206355.1similar to polyubiquitin-9e-38At5g03240UBQ3 (POLYUBIQUITIN 3)C.G.S.X.
0.054e-652Zea maysZm.17566.1.A1_atCK144813hypothetical protein LOC100193200-9e-6At1g32360zinc finger (CCCH-type) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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