Gene omics information

Query gene ID At1g32240
Gene name KAN2 (KANADI 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g32240840116KAN2 (KANADI 2)Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.S.X.H.G.
0.4761.2At4g18820827616ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication;C:plasma membrane;BOMFAPVS.X.H.G.
0.4761.2At1g12430837799ARK3 (ARMADILLO REPEAT KINESIN 3)Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.S.X.H.G.
0.4355.3At3g09670820124PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBS.X.H.G.
0.4253.9At3g02890821192PHD finger protein-relatedF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVAS.X.H.G.
0.4050.8At1g60860842378AGD2 (ARF-GAP DOMAIN 2)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.S.X.H.G.
0.3948.4At3g03300821300DCL2 (DICER-LIKE 2)Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.S.X.H.G.
0.3846.7At5g37020833672ARF8 (AUXIN RESPONSE FACTOR 8)Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.S.X.H.G.
0.3846.7At1g52310841661protein kinase family protein / C-type lectin domain-containing proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.3846.7At5g43500834370ATARP9 (ACTIN-RELATED PROTEIN 9)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
72.299.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.899.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
47.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.099.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.152e-22107At4g17695827490KAN3 (KANADI 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
0.121e-1791At5g16560831518KAN (KANADI)Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.C.G.S.X.
0.153e-1583At5g42630834270ATS (ABERRANT TESTA SHAPE)Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.C.G.S.X.
0.032e-344At5g43250834343NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOC.G.S.X.
0.021e-138At4g30930829217NFD1 (NUCLEAR FUSION DEFECTIVE 1)Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).C.G.S.X.
0.021e-138At1g68810843213basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBC.G.S.X.
0.026e-136At5g09750830835HEC3 (HECATE 3)F:transcription factor activity, DNA binding;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;POFC.G.S.X.
0.036e-136At4g00660828042DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:unknown;BOMFPAVC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.121e-1895Glycine maxGmaAffx.13464.1.S1_atBG507623--9e-44At5g16560KAN (KANADI)C.G.S.X.
0.023e-136Hordeum vulgareContig17348_atContig17348--4e-3At2g20880AP2 domain-containing transcription factor, putativeC.G.S.X.
0.102e-861Oryza sativaOs02g06969009630.m04565--2e-6At5g42630ATS (ABERRANT TESTA SHAPE)C.G.S.X.
0.238e-38159Populus trichocarpaPtpAffx.220074.1.S1_atpmrna36371hypothetical protein-6e-38At1g32240KAN2 (KANADI 2)C.G.S.X.
0.036e-136Triticum aestivumTaAffx.82953.1.S1_atCA664463--2e-1At5g43250NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13)C.G.S.X.
0.022e-136Vitis vinifera1620952_atBQ799161--3e-1At3g03800SYP131 (SYNTAXIN OF PLANTS 131)C.G.S.X.
0.021e+034Zea maysZm.6388.1.A1_atCD001224--8e-3At5g62500ATEB1B (END BINDING PROTEIN 1B)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048440The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style.
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
XGO:0009944The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage