CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g32100

Gene name PRR1 (PINORESINOL REDUCTASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At1g32100 840102 PRR1 (PINORESINOL REDUCTASE 1) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol. S.X. H.G.
0.57 73.8 At4g05170 825865 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM S.X. H.G.
0.36 43.6 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.35 41.6 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM S.X. H.G.
0.33 38.1 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
109.5 99.9 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
100.4 99.9 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
100.2 99.9 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
99.3 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
98.1 99.9 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
96.7 99.9 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
94.0 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
93.3 99.9 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
84.9 99.9 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
81.8 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 2e-114 412 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. C.G. S.X.
0.01 1e-1 38 At5g37010 833671 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA C.G. S.X.
0.01 1e-1 38 At5g04630 830340 CYP77A9 member of CYP77A C.G. S.X.
0.02 1e-1 38 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 5e-1 36 At5g56340 835734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.01 5e-1 36 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). C.G. S.X.
0.01 2e+0 34 At5g41580 834160 zinc ion binding F:zinc ion binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.00 2e+0 34 At4g13750 827009 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MPOBFA C.G. S.X.
0.02 2e+0 34 At4g35250 829678 vestitone reductase-related F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast;BOPFMA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Glycine max GmaAffx.90356.1.S1_s_at CF806081 - - 1e-3 At4g13660 PRR2 (PINORESINOL REDUCTASE 2) C.G. S.X.
0.13 2e-8 59 Hordeum vulgare Contig12212_at Contig12212 - - 4e-8 At1g32100 PRR1 (PINORESINOL REDUCTASE 1) C.G. S.X.
0.10 3e-16 87 Oryza sativa Os12g0265100 AK065317.1 - Pinoresinol-lariciresinol reductase TH2 2e-16 At1g32100 PRR1 (PINORESINOL REDUCTASE 1) C.G. S.X.
0.05 3e-3 44 Populus trichocarpa Ptp.644.1.S1_at CV228278 phenylcoumaran benzylic ether reductase -like protein - 4e-8 At4g13660 PRR2 (PINORESINOL REDUCTASE 2) C.G. S.X.
0.18 6e-10 65 Triticum aestivum Ta.1727.2.S1_at BJ255891 - - 3e-10 At1g32100 PRR1 (PINORESINOL REDUCTASE 1) C.G. S.X.
0.03 6e-7 54 Vitis vinifera 1610853_at CF213516 isoflavone reductase-like protein 1 - 3e-6 At4g34540 isoflavone reductase family protein C.G. S.X.
0.10 9e-10 63 Zea mays Zm.12422.1.S1_at AW400260 - - 9e-9 At4g13660 PRR2 (PINORESINOL REDUCTASE 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009807 The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage