CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g31950

Gene name terpene synthase/cyclase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO S.X. H.G.
0.89 94.6 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.86 93.1 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.86 93.1 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.50 65.3 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.1 99.9 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
97.5 99.9 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
97.4 99.9 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
84.9 99.9 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
82.7 99.9 GSM266664 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
77.4 99.9 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
76.0 99.9 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
73.4 99.9 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
69.9 99.9 GSM184632 Arabidopsis, whole roots, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
69.0 99.9 GSM184890 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 1802 At3g14540 820680 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB C.G. S.X.
0.83 0 1770 At3g14520 820677 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO C.G. S.X.
0.36 9e-72 272 At3g14490 820672 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO C.G. S.X.
0.19 3e-22 107 At1g33750 840266 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO C.G. S.X.
0.22 4e-15 83 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO C.G. S.X.
0.25 7e-14 79 At3g32030 822955 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POF C.G. S.X.
0.03 4e-3 44 At5g44630 834491 terpene synthase/cyclase family protein Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. C.G. S.X.
0.05 4e-3 44 At4g20210 827768 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO C.G. S.X.
0.05 4e-3 44 At3g29190 822572 lyase/ magnesium ion binding F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.82790.2.S1_at AW307074 - - 2e-4 At1g65320 CBS domain-containing protein C.G. S.X.
0.01 4e-1 36 Hordeum vulgare HVSMEk0012K02r2_at HVSMEk0012K02r2 - - 4e+0 At5g64900 PROPEP1 C.G. S.X.
0.01 2e+0 36 Oryza sativa Os07g0441100 9635.m02488 - - 4e+0 At5g37415 sequence-specific DNA binding / transcription factor C.G. S.X.
0.02 8e-2 40 Populus trichocarpa PtpAffx.53932.1.A1_at BU791154 - - 1e+0 At4g32960 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.16755.3.S1_at CA692188 - - 3e+0 At3g50270 transferase family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1614762_at CF414632 - - 1e-2 At5g65207 unknown protein C.G. S.X.
0.01 6e+0 32 Zea mays ZmAffx.1096.1.A1_at AW090847 - - 2e-1 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00265 Sesquiterpenoid biosynthesis
00393 Monoterpenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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