CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g31710

Gene name copper amine oxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At1g31710 840058 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA S.X. H.G.
0.73 85.5 At3g16390 820886 NSP3 (NITRILE SPECIFIER PROTEIN 3) Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. S.X. H.G.
0.67 81.6 At3g16450 820893 jacalin lectin family protein F:molecular_function unknown;P:response to cold;C:nucleus;PO S.X. H.G.
0.53 68.6 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. S.X. H.G.
0.52 67.4 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF S.X. H.G.
0.52 67.4 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.50 65.3 At2g22770 816807 NAI1 regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica. S.X. H.G.
0.50 65.3 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.50 65.3 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. S.X. H.G.
0.47 61.2 At1g76790 844013 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
92.0 99.9 GSM131643 ATGE_2_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
81.1 99.9 GSM131644 ATGE_2_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
78.7 99.9 GSM131645 ATGE_2_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
33.4 99.7 GSM133137 S1500_2H_A GSE5688 AtGenExpress: Response to sulfate limitation
29.3 99.7 GSM133125 S0_2H_A GSE5688 AtGenExpress: Response to sulfate limitation
29.1 99.7 GSM133126 S0_2H_B GSE5688 AtGenExpress: Response to sulfate limitation
28.3 99.7 GSM131206 AtGen_D-40_3-WL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
27.5 99.7 GSM131203 AtGen_D-37_3-BL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
27.3 99.7 GSM133139 S1500_4H_A GSE5688 AtGenExpress: Response to sulfate limitation
26.5 99.7 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 989 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.67 1e-92 341 At1g31670 840054 copper amine oxidase, putative F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.01 7e-2 40 At4g12270 826835 copper amine oxidase family protein F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBPOMA C.G. S.X.
0.01 7e-2 40 At4g12290 826838 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:vacuole;FBMOPA C.G. S.X.
0.04 3e-1 38 At4g14940 827152 ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1) atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development. C.G. S.X.
0.01 3e-1 38 At3g27430 822364 PBB1 Encodes 20S proteasome beta subunit PBB1 (PBB1). C.G. S.X.
0.01 3e-1 38 At1g50840 841506 POLGAMMA2 (polymerase gamma 2) DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation. C.G. S.X.
0.01 1e+0 36 At5g66490 836781 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 38 Glycine max Gma.4659.1.S1_at AW100643 - - 2e-7 At1g31690 amine oxidase/ copper ion binding / quinone binding C.G. S.X.
0.01 3e-2 40 Hordeum vulgare Contig24387_at Contig24387 - - 1e+0 At5g23310 FSD3 (FE SUPEROXIDE DISMUTASE 3) C.G. S.X.
0.01 8e+0 34 Oryza sativa OsAffx.9912.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 36 Populus trichocarpa PtpAffx.158132.1.A1_at CV282478 hypothetical protein - 3e-12 At3g43670 copper amine oxidase, putative C.G. S.X.
0.01 2e+1 32 Triticum aestivum TaAffx.6302.1.S1_at CA688560 - - 4e+0 At3g03600 RPS2 (RIBOSOMAL PROTEIN S2) C.G. S.X.
0.02 5e+0 32 Vitis vinifera 1622424_at CA813635 hypothetical protein LOC100265980 - 9e-11 At5g44200 CBP20 (CAP-BINDING PROTEIN 20) C.G. S.X.
0.01 4e-1 36 Zea mays Zm.19043.1.S1_at AY109466.1 - - 1e-1 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009308 The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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