CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g31690

Gene name amine oxidase/ copper ion binding / quinone binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA S.X. H.G.
0.77 88.0 At1g31680 - - - S.X. H.G.
0.05 1.1 At3g15030 820732 TCP4 (TCP family transcription factor 4) Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. S.X. H.G.
0.04 0.9 At3g63160 825491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;P S.X. H.G.
0.02 0.4 At1g53230 841756 TCP3 Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. S.X. H.G.
0.01 0.2 At1g67660 843091 DNA binding / nuclease F:DNA binding, nuclease activity;P:biological_process unknown;C:unknown;OBPVM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.2 99.8 GSM134444 St.Clair_1-69_369_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
39.5 99.8 GSM134447 St.Clair_1-72_374_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
39.1 99.8 GSM134366 St.Clair_1-27_449_Cvi-1_0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
38.7 99.8 E-ATMX-6-raw-cel-1308219081
35.1 99.7 GSM134438 St.Clair_1-63_372_Kin-0_0.02%-silwet_Rep3_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
34.7 99.7 E-TABM-21-raw-cel-529816608
34.4 99.7 GSM133794 Bird_1-1_high-light-ambientCO2_Rep1_ATH1 GSE5733 Characterisation of genetic basis of changes in stomatal numbers at elevated atmospheric carbon dioxide concentrations
33.9 99.7 GSM265847 short 17A GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
32.9 99.7 E-TABM-61-raw-cel-683343592
31.0 99.7 GSM134462 St.Clair_1-87_370_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 971 At1g31710 840058 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.74 0 952 At1g31670 840054 copper amine oxidase, putative F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.03 5e-9 63 At4g14940 827152 ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1) atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development. C.G. S.X.
0.05 2e-5 52 At4g12290 826838 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:vacuole;FBMOPA C.G. S.X.
0.05 2e-5 52 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA C.G. S.X.
0.03 7e-2 40 At3g43670 823469 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.01 3e-1 38 At5g27630 832825 ACBP5 (ACYL-COA BINDING PROTEIN 5) Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. C.G. S.X.
0.01 3e-1 38 At5g42350 834241 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB C.G. S.X.
0.01 3e-1 38 At5g42360 834242 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-5 52 Glycine max GmaAffx.60387.1.S1_at BM954488 - - 3e-4 At3g43670 copper amine oxidase, putative C.G. S.X.
0.01 5e-1 36 Hordeum vulgare S0001000056O23F1_at S0001000056O23F1 - - 3e+0 At5g14910 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 5e-1 38 Oryza sativa Os07g0572100 AK099435.1 - Copper amine oxidase precursor (EC 1.4.3.6) 1e-5 At4g14940 ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1) C.G. S.X.
0.07 2e-2 42 Populus trichocarpa Ptp.3951.1.S1_at DN488608 hypothetical protein - 8e-3 At1g31690 amine oxidase/ copper ion binding / quinone binding C.G. S.X.
0.01 4e+0 34 Triticum aestivum TaAffx.29964.1.S1_at CA631550 - - 1e+0 At5g66180 - C.G. S.X.
0.04 5e-3 42 Vitis vinifera 1614397_at CD004436 hypothetical protein LOC100257527 - 2e-12 At4g12280 copper amine oxidase family protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.6188.3.A1_a_at CA398347 hypothetical protein LOC100194248 - 2e+1 At5g24560 AtPP2-B12 (Phloem protein 2-B12) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0009308 The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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