CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g31120

Gene name KUP10

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At1g31120 839997 KUP10 potassium transporter S.X. H.G.
0.56 73.0 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.46 59.8 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. S.X. H.G.
0.45 58.3 At1g70300 843366 KUP6 potassium transporter S.X. H.G.
0.29 30.3 At1g09740 837502 ethylene-responsive protein, putative F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM S.X. H.G.
0.27 26.2 At2g36380 818211 PDR6 F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV S.X. H.G.
0.26 24.4 At3g27190 822338 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:unknown;BOMPFAV S.X. H.G.
0.26 24.4 At4g15093 827174 catalytic LigB subunit of aromatic ring-opening dioxygenase family F:electron carrier activity, oxidoreductase activity, ferrous iron binding, zinc ion binding, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;P:oxidation reduction, cellular aromatic compound metabolic process;C:cellular_component unknown;BFOPAM S.X. H.G.
0.23 19.3 At5g63930 836514 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.23 19.3 At2g16790 816180 shikimate kinase family protein F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.2 99.8 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
39.5 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.6 99.7 GSM179960 Arabidopsis roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
34.1 99.7 GSM179969 Arabidopsis aux1 mutant roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
31.1 99.7 GSM179967 Arabidopsis aux1 mutant roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
30.2 99.7 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
30.1 99.7 GSM179961 Arabidopsis roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
28.3 99.7 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
27.4 99.7 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
26.9 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 1673 At2g35060 818071 KUP11 potassium transporter C.G. S.X.
0.25 3e-35 151 At4g19960 827740 potassium ion transmembrane transporter F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAV C.G. S.X.
0.03 5e-3 44 At2g40540 818649 KT2 (POTASSIUM TRANSPORTER 2) putative potassium transporter AtKT2p (AtKT2) mRNA, C.G. S.X.
0.03 2e-2 42 At5g14880 831340 potassium transporter, putative F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAV C.G. S.X.
0.01 2e-2 42 At3g54220 824589 SCR (SCARECROW) Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR. C.G. S.X.
0.01 8e-2 40 At5g19090 832028 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-19 99 Glycine max GmaAffx.18686.1.S1_at BU548864 - - 5e-20 At1g31120 KUP10 C.G. S.X.
0.24 2e-19 97 Hordeum vulgare Contig935_at Contig935 - - 3e-19 At1g31120 KUP10 C.G. S.X.
0.25 3e-30 135 Oryza sativa Os09g0563200 AK065464.1 - K+ potassium transporter family protein 2e-30 At1g31120 KUP10 C.G. S.X.
0.36 2e-37 159 Populus trichocarpa PtpAffx.203160.1.S1_at pmrna6263 hypothetical protein - 1e-37 At1g31120 KUP10 C.G. S.X.
0.22 9e-14 79 Triticum aestivum Ta.16671.1.S1_at CA610667 - - 4e-14 At1g31120 KUP10 C.G. S.X.
0.10 7e-21 101 Vitis vinifera 1607241_at CB980618 hypothetical protein LOC100264706 - 7e-21 At2g35060 KUP11 C.G. S.X.
0.17 2e-22 107 Zea mays Zm.13502.1.A1_at CA403391 hypothetical protein LOC100191398 - 9e-4 At2g35060 KUP11 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage