CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g31060

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.62 77.3 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.59 74.7 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.59 74.7 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) S.X. H.G.
0.59 74.7 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF S.X. H.G.
0.58 73.8 At2g30840 817635 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase S.X. H.G.
0.57 73.8 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
0.57 73.8 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.55 70.6 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
203.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.9 99.8 GSM75512 Col-0 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
56.7 99.8 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
52.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.4 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.0 99.8 GSM291024 root - 08% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
45.5 99.8 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
45.1 99.8 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
43.3 99.8 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-1 34 At1g54270 841868 EIF4A-2 member of eIF4A - eukaryotic initiation factor 4A C.G. S.X.
0.01 2e+0 32 At5g60250 836147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB C.G. S.X.
0.05 2e+0 32 At5g46010 834641 homeobox-leucine zipper transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:vacuole;P C.G. S.X.
0.01 2e+0 32 At5g66960 836830 prolyl oligopeptidase family protein F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:membrane;OBMPFAV C.G. S.X.
0.01 2e+0 32 At4g16050 827290 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.01 2e+0 32 At4g29440 829065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 2e+0 32 At4g27780 828891 ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2) Encodes acyl-CoA-binding protein with ankyrin repeats C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-2 38 Glycine max HgAffx.5151.1.S1_at CD748273 - - 8e-2 At1g31060 unknown protein C.G. S.X.
0.08 1e-3 42 Hordeum vulgare S0000200079C09F1_s_at S0000200079C09F1 - - 2e-3 At1g31060 unknown protein C.G. S.X.
0.06 1e+0 34 Oryza sativa OsAffx.17660.1.S1_at - - - 0 C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.45541.1.S1_at CK106014 - - 1e+0 At5g64210 AOX2 C.G. S.X.
0.05 2e-1 36 Triticum aestivum TaAffx.79349.1.S1_at CA717782 - - 2e-1 At1g31060 unknown protein C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1620809_at CF404050 hypothetical protein LOC100252547 - 9e-1 At1g25370 unknown protein C.G. S.X.
0.04 4e+0 30 Zea mays Zm.5851.9.A1_at AY105349.1 - - 4e+0 At5g21970 ubiquitin thiolesterase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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