Gene omics information

Query gene ID At1g30900
Gene name vacuolar sorting receptor, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2830.3At1g30900839974vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBFAS.X.H.G.
0.4050.8At5g45500834586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBS.X.H.G.
0.4050.8At5g45510834587leucine-rich repeat family proteinF:protein binding;P:unknown;C:cytosol;MOPBFVAS.X.H.G.
0.2930.3At3g51330824296aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBVS.X.H.G.
0.051.1At5g58940836011CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1)Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
107.599.9GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
83.099.9GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
80.599.9GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
57.899.8GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
49.699.8GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
42.899.8GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
41.799.8E-MEXP-739-raw-cel-1099467303
36.899.7GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
33.399.7GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
31.099.7E-MEXP-739-raw-cel-1099467312
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.744e-179628At2g34940818059vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBFC.G.S.X.
0.251e-1895At4g20110827757vacuolar sorting receptor, putativeF:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFAC.G.S.X.
0.132e-861At2g14720815960VSR-2encodes a vacuolar sorting receptorC.G.S.X.
0.153e-757At2g14740815962ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)F:calcium ion binding;P:intracellular protein transport, protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex, membrane;MOPBFAC.G.S.X.
0.091e-656At3g52850824451VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.C.G.S.X.
0.071e-242At2g30290817579vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.173e-20101Glycine maxGma.4093.1.S1_atBI700897--5e-20At2g34940vacuolar sorting receptor, putativeC.G.S.X.
0.133e-1169Hordeum vulgareContig11779_atContig11779--4e-34At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)C.G.S.X.
0.092e-656Oryza sativaOs04g0678800BQ908766--2e-24At3g52850VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)C.G.S.X.
0.082e-1895Populus trichocarpaPtpAffx.766.1.S1_s_atCV260933hypothetical protein-2e-135At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)C.G.S.X.
0.112e-1481Triticum aestivumTa.4251.1.A1_atBT009606.1--3e-26At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)C.G.S.X.
0.238e-1167Vitis vinifera1613114_atCB970714hypothetical protein LOC100252664-2e-10At1g30900vacuolar sorting receptor, putativeC.G.S.X.
0.088e-1581Zea maysZm.5530.1.A1_atAI629939hypothetical protein LOC100191845-1e-18At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006623The process of directing proteins towards the vacuole, usually using signals contained within the protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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