CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g30850

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At3g12540 820433 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA S.X. H.G.
0.44 57.2 At2g44110 819017 MLO15 (MILDEW RESISTANCE LOCUS O 15) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.42 53.9 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. S.X. H.G.
0.32 35.7 At1g62980 842601 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
370.2 100.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
236.9 100.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
232.5 100.0 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
210.8 100.0 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
201.8 100.0 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
200.3 100.0 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
193.2 100.0 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
141.7 99.9 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
128.1 99.9 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
114.5 99.9 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 8e-9 61 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At5g12130 831086 PDE149 (PIGMENT DEFECTIVE 149) F:unknown;P:thylakoid membrane organization;C:chloroplast thylakoid membrane, integral to membrane;BOPAM C.G. S.X.
0.02 4e-1 36 At3g45260 823664 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB C.G. S.X.
0.03 4e-1 36 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.02 2e+0 34 At5g51900 835265 cytochrome P450 family F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOA C.G. S.X.
0.01 2e+0 34 At5g19320 832052 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase. C.G. S.X.
0.02 2e+0 34 At5g66990 836834 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e+0 34 At5g65630 836689 GTE7 (Global transcription factor group E 7) This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max HgAffx.6193.1.S1_at CB826589 - - 5e+0 At5g62080 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig3535_at Contig3535 - - 2e-2 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.03 9e-1 36 Oryza sativa Os04g0245800 9632.m01551 - - 3e-1 At1g30850 unknown protein C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.134601.1.A1_at CV229617 - - 2e-1 At4g25760 AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2) C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.106700.1.S1_at CA713394 - - 3e+0 At5g37055 SEF (SERRATED LEAVES AND EARLY FLOWERING) C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1610179_at CA818005 - - 8e-8 At1g51650 ATP synthase epsilon chain, mitochondrial C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.410.1.A1_at AI670262 - - 2e-1 At5g61630 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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