CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g30760

Gene name FAD-binding domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.18 11.4 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
0.44 57.2 At2g39370 818522 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO S.X. H.G.
0.44 57.2 At2g42440 818844 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At5g06080 830495 LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33) F:unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.25 22.6 At3g28345 822463 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV S.X. H.G.
0.04 0.9 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
471.6 100.0 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
370.3 100.0 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
234.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
199.9 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
133.3 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
111.2 99.9 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
109.0 99.9 GSM179973 Arabidopsis roots, IAA treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
101.2 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
100.7 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
100.5 99.9 GSM179971 Arabidopsis roots, mock treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 3e-99 363 At2g34790 818044 MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAM C.G. S.X.
0.03 9e-10 65 At4g20800 827828 FAD-binding domain-containing protein F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM C.G. S.X.
0.13 5e-8 59 At5g44400 834466 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAM C.G. S.X.
0.06 9e-7 56 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM C.G. S.X.
0.04 1e-5 52 At1g30730 839953 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM C.G. S.X.
0.05 5e-5 50 At5g44360 834462 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM C.G. S.X.
0.05 5e-5 50 At4g20820 827830 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:unknown;FBPOAM C.G. S.X.
0.03 5e-5 50 At1g11770 837722 FAD binding / catalytic/ electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA C.G. S.X.
0.09 5e-5 50 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Glycine max GmaAffx.90035.1.S1_at CF805760 FAD-linked oxidoreductase 2 - 4e-6 At5g44360 FAD-binding domain-containing protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig20750_at Contig20750 - - 8e-1 At1g74448 unknown protein C.G. S.X.
0.01 1e-1 40 Oryza sativa Os.47913.1.A1_at - - - 0 C.G. S.X.
0.06 1e-3 46 Populus trichocarpa PtpAffx.224218.1.S1_at pmrna42563 hypothetical protein - 3e-6 At5g44400 FAD-binding domain-containing protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.105835.1.S1_at CA729204 - - 3e-4 At4g16240 unknown protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1615219_at CB982054 hypothetical protein LOC100242702 - 1e+0 At3g57450 unknown protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.4650.2.S1_x_at AI691438 Formate dehydrogenase2 - 4e+0 At3g18773 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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