CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g30700

Gene name FAD-binding domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At1g30700 839950 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA S.X. H.G.
0.50 65.3 At3g55150 824681 ATEXO70H1 (exocyst subunit EXO70 family protein H1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.46 59.8 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
0.44 57.2 At2g44370 819044 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF S.X. H.G.
0.40 50.8 At3g54420 824608 ATEP3 encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. S.X. H.G.
0.36 43.6 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.0 99.9 E-MEXP-1094-raw-cel-1379507313
82.4 99.9 E-MEXP-807-raw-cel-1173272948
77.2 99.9 E-MEXP-1094-raw-cel-1379507273
54.9 99.8 E-NASC-76-raw-cel-1359878976
53.4 99.8 E-NASC-76-raw-cel-1359879158
50.9 99.8 E-NASC-76-raw-cel-1359879106
49.5 99.8 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
48.3 99.8 GSM142848 MG001_ATH1_A29-Torres-9N3 GSE6176 Impact of Type III effectors on plant defense responses
48.0 99.8 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
47.1 99.8 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-14 81 At4g20840 827832 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:apoplast, plasma membrane;FBPOAM C.G. S.X.
0.08 6e-11 69 At1g30710 839951 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA C.G. S.X.
0.14 1e-8 61 At4g20830 827831 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall;FBPOAM C.G. S.X.
0.09 2e-7 57 At1g11770 837722 FAD binding / catalytic/ electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA C.G. S.X.
0.07 8e-7 56 At1g34575 840361 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA C.G. S.X.
0.02 1e-5 52 At4g20860 827834 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM C.G. S.X.
0.02 8e-4 46 At2g34790 818044 MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAM C.G. S.X.
0.07 1e-2 42 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-3 44 Glycine max GmaAffx.92274.1.S1_at CF807999 - - 1e-3 At1g30700 FAD-binding domain-containing protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare rbah59e19_s_at rbah59e19 - - 4e+0 At4g36960 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.5684.1.A1_at - - - 0 C.G. S.X.
0.16 1e-3 46 Populus trichocarpa PtpAffx.224214.1.S1_at pmrna42556 hypothetical protein - 7e-4 At1g30700 FAD-binding domain-containing protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.29657.1.S1_at CA637928 - - 3e-1 At3g24100 - C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1621776_at CD715288 hypothetical protein LOC100267239 - 2e+0 At2g46530 ARF11 (AUXIN RESPONSE FACTOR 11) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.17665.1.S1_at CK369447 - - 3e+0 At5g07840 ankyrin repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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