CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g30600

Gene name subtilase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At1g30600 839940 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM S.X. H.G.
0.55 70.6 At2g45340 819142 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.46 59.8 At2g14860 815975 peroxisomal membrane protein 22 kDa, putative F:unknown;P:biological_process unknown;C:integral to membrane, peroxisomal membrane;MFPOV S.X. H.G.
0.23 19.3 At4g21100 827857 DDB1B (Damaged DNA Binding Protein 1 B) One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase. S.X. H.G.
0.20 14.4 At3g04860 819646 unknown protein F:unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.5 99.9 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
85.4 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
72.7 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
68.2 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.6 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.4 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.6 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.5 99.8 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
36.7 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 2e-54 214 At4g20430 827791 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM C.G. S.X.
0.14 2e-39 165 At5g44530 834480 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAM C.G. S.X.
0.03 1e-3 46 At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM C.G. S.X.
0.03 3e-1 38 At2g19170 816434 SLP3 Encodes a novel subtilisin-like serine protease. C.G. S.X.
0.01 3e-1 38 At1g50270 841449 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 3e-1 38 At1g62970 842599 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;MFOBPVA C.G. S.X.
0.01 1e+0 36 At5g55520 835646 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 1e+0 36 At5g47380 834785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-6 56 Glycine max GmaAffx.24468.1.A1_at BU550996 - - 2e-8 At5g44530 subtilase family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig12258_at Contig12258 - - 3e-19 At4g31600 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related C.G. S.X.
0.11 3e-21 105 Oryza sativa Os01g0769200 AK070376.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 8e-21 At4g20430 subtilase family protein C.G. S.X.
0.22 2e-67 258 Populus trichocarpa PtpAffx.210145.1.S1_at pmrna19989 hypothetical protein - 2e-51 At4g20430 subtilase family protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.22929.2.S1_s_at BQ800794 - - 7e-9 At5g27740 EMB2775 (EMBRYO DEFECTIVE 2775) C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1608305_at CF415367 hypothetical protein LOC100258034 - 5e-3 At3g23090 - C.G. S.X.
0.02 1e-4 48 Zea mays ZmAffx.839.1.A1_at AI770590 - - 1e-5 At2g19170 SLP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0043086 Any process that stops or reduces the activity of an enzyme.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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