CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g30510

Gene name ATRFNR2 (ROOT FNR 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. S.X. H.G.
0.57 73.8 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins S.X. H.G.
0.40 50.8 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.36 43.6 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.29 30.3 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
186.5 100.0 GSM184511 Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
109.4 99.9 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
101.7 99.9 GSM184536 Protoplasted root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
95.3 99.9 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.4 99.9 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
87.2 99.9 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
83.0 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.3 99.9 GSM184491 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.5 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.9 99.9 GSM184488 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 1e-75 284 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. C.G. S.X.
0.02 4e-2 40 At2g34010 817962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.01 4e-2 40 At1g12280 837782 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.02 6e-1 36 At2g18190 816332 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAV C.G. S.X.
0.02 2e+0 34 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 2e+0 34 At5g09790 830839 ATXR5 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 2e-26 121 Glycine max Gma.8075.1.S1_at BG237495 - - 1e-26 At1g30510 ATRFNR2 (ROOT FNR 2) C.G. S.X.
0.46 5e-52 204 Hordeum vulgare Contig5403_at Contig5403 - - 1e-51 At1g30510 ATRFNR2 (ROOT FNR 2) C.G. S.X.
0.43 1e-52 208 Oryza sativa Os03g0784700 D17410.1 - - 3e-65 At4g05390 ATRFNR1 (ROOT FNR 1) C.G. S.X.
0.32 1e-33 145 Populus trichocarpa Ptp.1044.1.S1_at CF235854 hypothetical protein - 3e-33 At4g05390 ATRFNR1 (ROOT FNR 1) C.G. S.X.
0.37 8e-25 115 Triticum aestivum Ta.25450.1.S1_at CD453947 - - 5e-48 At4g05390 ATRFNR1 (ROOT FNR 1) C.G. S.X.
0.11 5e-17 87 Vitis vinifera 1620788_at CF603169 similar to ferrodoxin NADP oxidoreductase - 2e-17 At4g05390 ATRFNR1 (ROOT FNR 1) C.G. S.X.
0.39 2e-17 89 Zea mays Zm.10590.1.S1_at BM378591 hypothetical protein LOC100194249 - 6e-17 At1g30510 ATRFNR2 (ROOT FNR 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00195 Photosynthesis
01100 Metabolic pathways
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