CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g30500

Gene name NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At1g30500 839929 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO S.X. H.G.
0.57 73.8 At1g22370 838844 AtUGT85A5 (UDP-glucosyl transferase 85A5) F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOF S.X. H.G.
0.24 20.7 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. S.X. H.G.
0.18 11.4 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA S.X. H.G.
0.09 2.8 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
111.8 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
108.0 99.9 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
96.4 99.9 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
84.9 99.9 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
79.6 99.9 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
72.8 99.9 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
65.9 99.8 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
63.4 99.8 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
59.7 99.8 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
59.6 99.8 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 2e-48 192 At2g34720 818037 NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase;C:CCAAT-binding factor complex, nucleus;PMFO C.G. S.X.
0.01 3e-1 36 At2g26780 817219 binding F:binding;P:biological_process unknown;C:membrane;MFPO C.G. S.X.
0.03 3e-1 36 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB C.G. S.X.
0.01 1e+0 34 At5g44800 834510 CHR4 (CHROMATIN REMODELING 4) F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVA C.G. S.X.
0.01 1e+0 34 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV C.G. S.X.
0.01 1e+0 34 At4g15290 827195 ATCSLB05 encodes a gene similar to cellulose synthase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-8 59 Glycine max GmaAffx.82813.1.S1_at BG045517 - - 8e-5 At2g34720 NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4) C.G. S.X.
0.03 5e-1 34 Hordeum vulgare HV_CEb0020D23r2_at HV_CEb0020D23r2 - - 7e-2 At4g23432 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os12g0202700 9640.m00951 - O-methyltransferase, family 2 protein 4e-1 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) C.G. S.X.
0.21 2e-9 63 Populus trichocarpa PtpAffx.5673.1.S1_a_at CV240032 hypothetical protein - 1e-11 At1g30500 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.50248.1.S1_at CA743937 - - 2e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.05 1e+0 32 Vitis vinifera 1613912_at AF220405.1 - - 2e-7 At5g12840 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.10896.1.A1_at AY106661.1 - - 2e-1 At2g23920 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0032582 Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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