CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29980

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB S.X. H.G.
0.44 57.2 At1g02370 837735 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFB S.X. H.G.
0.43 55.3 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV S.X. H.G.
0.42 53.9 At4g29510 829072 PRMT11 (ARGININE METHYLTRANSFERASE 11) Has arginine N-methyltransferase activity. Modifies AtMBD7. S.X. H.G.
0.40 50.8 At3g63130 825488 RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation. S.X. H.G.
0.40 50.8 At1g53645 841801 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MOFPBVA S.X. H.G.
0.39 48.4 At1g80750 844414 60S ribosomal protein L7 (RPL7A) F:structural constituent of ribosome, transcription regulator activity;P:translation;C:cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit;MOFPA S.X. H.G.
0.39 48.4 At5g45780 834618 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.39 48.4 At3g23620 821942 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP S.X. H.G.
0.38 46.7 At3g57000 824867 nucleolar essential protein-related F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.2 99.9 E-MEXP-849-raw-cel-1181980998
55.6 99.8 E-MEXP-849-raw-cel-1181980990
55.6 99.8 E-MEXP-849-raw-cel-1181981046
51.5 99.8 E-MEXP-849-raw-cel-1181981038
49.1 99.8 E-MEXP-849-raw-cel-1181981030
45.6 99.8 GSM133319 RIKEN-LI5A GSE5701 AtGenExpress: Basic hormone treatment of seeds
44.0 99.8 GSM133317 RIKEN-LI4A GSE5701 AtGenExpress: Basic hormone treatment of seeds
38.0 99.8 E-MEXP-849-raw-cel-1181980982
35.2 99.7 E-MEXP-849-raw-cel-1181981006
34.3 99.7 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 1e-109 397 At2g34510 818014 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB C.G. S.X.
0.03 4e-2 40 At2g14247 2745524 Expressed protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 2e-1 38 At5g25460 832620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.05 2e-1 38 At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P C.G. S.X.
0.01 6e-1 36 At5g50990 835172 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM C.G. S.X.
0.01 6e-1 36 At5g20170 832140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPF C.G. S.X.
0.01 6e-1 36 At5g36670 833632 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOPFBV C.G. S.X.
0.01 6e-1 36 At5g36740 833643 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOPFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-30 135 Glycine max GmaAffx.63408.1.S1_at AW099756 - - 5e-31 At1g29980 - C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig5845_at Contig5845 - - 3e-3 At2g34510 - C.G. S.X.
0.12 5e-12 73 Oryza sativa Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - C.G. S.X.
0.19 6e-8 59 Populus trichocarpa Ptp.5631.1.S1_at CA933757 hypothetical protein - 4e-8 At1g29980 - C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.23787.1.S1_at CA730454 - - 3e-1 At1g35460 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.07 1e-17 89 Vitis vinifera 1609590_s_at CB981725 hypothetical protein LOC100253669 - 3e-25 At2g34510 - C.G. S.X.
0.06 4e-3 42 Zea mays Zm.2385.2.A1_a_at AY111554.1 DNA-binding protein - 1e-15 At2g34510 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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