CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29680

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.89 94.6 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.87 93.5 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.78 88.6 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.77 88.0 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO S.X. H.G.
0.73 85.5 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.69 82.9 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.69 82.9 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.68 82.2 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.64 78.9 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
613.0 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
531.0 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
310.7 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
277.4 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
251.5 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
243.9 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
232.8 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
221.7 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
211.9 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
208.8 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 2e-5 50 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.02 3e-1 36 At5g19680 832088 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.03 3e-1 36 At4g18920 827627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.01 3e-1 36 At1g01660 839461 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV C.G. S.X.
0.02 3e-1 36 At1g75430 843879 BLH11 (BEL1-LIKE HOMEODOMAIN 11) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.01 1e+0 34 At4g38590 830016 glycosyl hydrolase family 35 protein putative beta-galactosidase (BGAL14 gene) C.G. S.X.
0.02 1e+0 34 At4g22150 828304 PUX3 Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3) C.G. S.X.
0.02 1e+0 34 At3g54470 824612 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 36 Glycine max GmaAffx.29786.1.S1_at AI748057 beta-amyrin and sophoradiol 24-hydroxylase - 6e-13 At1g34020 transporter-related C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig6446_at Contig6446 - - 5e-1 At1g29680 unknown protein C.G. S.X.
0.08 4e-2 40 Oryza sativa Os01g0728700 AK108000.1 - Conserved hypothetical protein 3e-2 At1g29680 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.103721.1.A1_at CK095041 - - 7e-1 At1g29680 unknown protein C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.51867.1.S1_at CA717368 - - 2e-1 At1g29680 unknown protein C.G. S.X.
0.12 1e-4 46 Vitis vinifera 1613370_at CB346796 hypothetical protein LOC100246418 - 5e-4 At1g29680 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6289.1.A1_at AI691267 - - 4e+0 At4g19620 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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