CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29570

Gene name zinc finger protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At1g29570 839834 zinc finger protein-related F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.94 96.7 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.86 93.1 At2g01500 814678 PFS2 (PRETTY FEW SEEDS 2) PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. S.X. H.G.
0.85 92.4 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At2g33160 817877 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
0.79 89.1 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.78 88.6 At3g28280 822454 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.76 87.4 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
395.9 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
373.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
370.6 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
317.6 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
300.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
286.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
269.9 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
262.7 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
250.0 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
231.3 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 1e-26 121 At1g29610 839838 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.27 3e-14 79 At1g29560 839833 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.08 2e-9 63 At1g04990 839351 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.07 2e-3 44 At1g29600 839837 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.01 3e-2 40 At5g08550 830755 ILP1 (increased level of polyploidy1-1D) Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. C.G. S.X.
0.01 1e-1 38 At5g43100 834326 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFO C.G. S.X.
0.02 1e-1 38 At2g17120 816217 LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR) F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.59139.2.S1_at BM891677 - - 3e+0 At5g57565 protein kinase family protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEg0011K10r2_at HVSMEg0011K10r2 - - 3e+0 At2g30695 - C.G. S.X.
0.02 4e+0 34 Oryza sativa Os03g0400100 9631.m02788 - - 4e+0 At2g44650 CHL-CPN10 (CHLOROPLAST CHAPERONIN 10) C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.7268.1.A1_at CV256585 - - 2e+0 At1g48320 thioesterase family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.12160.1.A1_at BJ286243 - - 8e-1 At5g04470 SIM (SIAMESE) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1613232_at CF516759 hypothetical LOC100244581 - 1e+0 At1g15710 prephenate dehydrogenase family protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.564.1.A1_at AI714609 - - 8e-1 At3g27340 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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