CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29480

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g29480 839825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP S.X. H.G.
0.92 96.0 At3g30846 3769163 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.83 91.4 At5g28950 833021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.71 84.2 At2g11165 3768074 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At5g34895 833430 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.59 74.7 At1g36670 840575 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.55 70.6 At3g47270 823880 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
283.5 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
283.5 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
253.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
252.7 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
244.9 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
235.5 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
231.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
214.5 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
208.9 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
190.3 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At5g57480 835852 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.01 3e-1 36 At1g69990 843336 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
0.03 1e+0 34 At5g22545 832316 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 34 At3g10550 820220 phosphatase/ protein tyrosine phosphatase F:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:cellular_component unknown;MOFP C.G. S.X.
0.02 1e+0 34 At3g22430 821813 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPFVA C.G. S.X.
0.01 1e+0 34 At3g60860 825257 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB C.G. S.X.
0.01 1e+0 34 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
0.02 1e+0 34 At2g34960 818060 CAT5 (CATIONIC AMINO ACID TRANSPORTER 5) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane. C.G. S.X.
0.02 1e+0 34 At2g28380 817386 DRB2 (DSRNA-BINDING PROTEIN 2) Encodes a cytoplasmic dsRNA-binding protein. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Glycine max Gma.17766.3.A1_at BI472161 - - 1e-5 At3g02730 TRXF1 (THIOREDOXIN F-TYPE 1) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare Contig16686_at Contig16686 - - 7e-3 At3g23620 brix domain-containing protein C.G. S.X.
0.02 7e-1 36 Oryza sativa Os07g0250900 AK107935.1 - Harpin-induced 1 domain containing protein 3e-2 At1g36940 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.65236.1.A1_at CK087944 hypothetical protein - 2e-1 At5g19630 unknown protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.7945.1.S1_at CA643198 - - 2e+0 Atmg01370 - C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1615507_at CF214611 hypothetical protein LOC100248922 - 9e-1 At5g06860 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) C.G. S.X.
0.02 6e-1 34 Zea mays Zm.17956.1.A1_at CF637428 - - 2e+0 At3g20570 plastocyanin-like domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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