CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29430

Gene name auxin-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P S.X. H.G.
0.91 95.6 At3g03830 821123 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.91 95.6 At3g03840 821121 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.86 93.1 At1g29500 839827 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;P S.X. H.G.
0.80 89.8 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P S.X. H.G.
0.67 81.6 At1g29440 839820 - F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P S.X. H.G.
0.67 81.6 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.7 99.9 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
38.4 99.8 GSM173446 oxt6 mutant, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
33.5 99.7 GSM62696 Columbia flowers_stage 13-14 GSE2848 Auxin Response Factor mediated flower gene expression
31.5 99.7 GSM139895 WT_non-polysome_rep1 GSE6024 eif3h/WT polysome loading
28.5 99.7 E-MEXP-285-raw-cel-440783335
27.8 99.7 E-MEXP-715-raw-cel-1121836113
27.6 99.7 E-MEXP-715-raw-cel-1121836247
24.9 99.6 E-MEXP-715-raw-cel-1121836087
22.1 99.6 GSM131232 AtGen_6-0112_Control-Shoots-0.5h_Rep2 GSE5620 AtGenExpress: Stress Treatments (Control plants)
21.2 99.6 E-MEXP-285-raw-cel-440783273
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.98 0 743 At5g27780 832840 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P C.G. S.X.
0.90 1e-138 492 At1g29440 839820 - F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P C.G. S.X.
0.76 3e-114 410 At1g29510 839828 SAUR68 (SMALL AUXIN UPREGULATED 68) F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P C.G. S.X.
0.72 2e-63 242 At1g29420 839818 - F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P C.G. S.X.
0.71 1e-52 206 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P C.G. S.X.
0.72 2e-51 202 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P C.G. S.X.
0.62 4e-43 174 At1g29490 839826 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P C.G. S.X.
0.69 3e-40 165 At1g29500 839827 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;P C.G. S.X.
0.02 2e-1 36 At1g59077 842231 - F:unknown;P:biological_process unknown;C:unknown;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.89781.1.S1_s_at CK606642 - - 7e-1 At5g27780 auxin-responsive family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig24759_at Contig24759 - - 5e+0 At5g27780 auxin-responsive family protein C.G. S.X.
0.03 6e+0 32 Oryza sativa OsAffx.22135.1.S1_x_at - - - 0 C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.209235.1.S1_at pmrna18263 hypothetical protein - 2e-8 At2g47010 unknown protein C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.58748.1.S1_at CA616579 - - 4e-6 At2g14285 - C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1613054_at BQ794856 hypothetical protein LOC100257133 - 1e-25 At4g34760 auxin-responsive family protein C.G. S.X.
0.04 9e-2 36 Zea mays Zm.3267.1.A1_at BE225116 small nuclear ribonucleoprotein F - 1e-13 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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