CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29280

Gene name WRKY65

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.41 52.4 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.84 91.9 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.78 88.6 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.78 88.6 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.75 86.9 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.74 86.1 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.73 85.5 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.70 83.5 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.63 78.1 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.55 70.6 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.8 99.8 E-MEXP-828-raw-cel-1156922905
44.8 99.8 E-MEXP-828-raw-cel-1156922296
43.8 99.8 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
43.2 99.8 E-MEXP-828-raw-cel-1156922368
37.1 99.7 E-MEXP-828-raw-cel-1156922318
36.7 99.7 GSM142728 CH001_ATH1_A007-Hampt-c4b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
33.4 99.7 E-MEXP-828-raw-cel-1156922809
32.6 99.7 E-MEXP-828-raw-cel-1156922572
31.5 99.7 GSM157329 Coates_1-1_Col-0_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
31.4 99.7 E-MEXP-828-raw-cel-1156922613
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 7e-12 71 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.14 7e-9 61 At2g34830 818048 WRKY35 (WRKY DNA-binding protein 35) member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.13 3e-8 59 At4g23550 828455 WRKY29 Encodes WRKY DNA-binding protein 29 (WRKY29). C.G. S.X.
0.07 2e-6 54 At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). C.G. S.X.
0.07 4e-4 46 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. C.G. S.X.
0.09 4e-4 46 At1g30650 839945 WRKY14 member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.02 1e-1 38 At5g14040 831252 mitochondrial phosphate transporter F:binding;P:transport;C:in 7 components;MFPOV C.G. S.X.
0.02 1e-1 38 At3g46780 823831 PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16) F:binding, catalytic activity;P:metabolic process;C:in 6 components;BOPMFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-9 63 Glycine max GmaAffx.91538.1.S1_s_at CF807263 transcription factor /// WRKY52 protein - 2e-36 At3g58710 WRKY69 C.G. S.X.
0.05 8e-4 44 Hordeum vulgare Contig7798_at Contig7798 - - 7e-13 At4g31550 WRKY11 C.G. S.X.
0.08 8e-10 65 Oryza sativa Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 C.G. S.X.
0.11 4e-5 50 Populus trichocarpa PtpAffx.68429.1.S1_a_at DN493879 hypothetical protein - 1e-8 At3g58710 WRKY69 C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.8733.1.S1_at CA620968 - - 2e-2 At1g12610 DDF1 (DWARF AND DELAYED FLOWERING 1) C.G. S.X.
0.16 4e-20 97 Vitis vinifera 1606659_s_at CF210179 hypothetical protein LOC100244564 - 2e-19 At1g29280 WRKY65 C.G. S.X.
0.03 4e-2 38 Zea mays Zm.257.1.A1_at BM332863 proline-rich protein - 2e-1 At1g29280 WRKY65 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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