CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29270

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.73 85.5 At1g63100 842613 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMB S.X. H.G.
0.44 57.2 At1g74420 843783 FUT3 (FUCOSYLTRANSFERASE 3) Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1. S.X. H.G.
0.10 3.4 At5g50110 835075 - F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPM S.X. H.G.
0.06 1.4 At1g72340 843566 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP S.X. H.G.
0.01 0.2 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
362.7 100.0 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
166.2 100.0 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
162.2 99.9 GSM133769 Lindsey_1-21_torpedo-basal_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
128.7 99.9 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
123.2 99.9 GSM133771 Lindsey_1-23_torpedo-apical_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
119.6 99.9 GSM133772 Lindsey_1-24_torpedo-apical_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
93.4 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
93.2 99.9 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
92.6 99.9 GSM133778 Lindsey_1-2_globular-apical_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
91.5 99.9 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 3e-3 42 At3g06840 819868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-2 38 At4g31520 829279 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 2e-1 36 At5g61720 836294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
0.02 7e-1 34 At5g40030 834000 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA C.G. S.X.
0.02 7e-1 34 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO C.G. S.X.
0.02 7e-1 34 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. C.G. S.X.
0.03 7e-1 34 At4g01460 828089 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.02 7e-1 34 At3g18180 821345 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.02 7e-1 34 At3g18170 821344 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.68153.1.S1_at BG551419 - - 1e-2 Atcg00770 - C.G. S.X.
0.05 5e+0 30 Hordeum vulgare HVSMEb0014M03r2_at HVSMEb0014M03r2 - - 9e+0 At3g27970 exonuclease/ nucleic acid binding / zinc ion binding C.G. S.X.
0.04 1e+0 34 Oryza sativa Os02g0282700 9630.m01710 - - 2e-3 At3g57950 unknown protein C.G. S.X.
0.04 2e-1 36 Populus trichocarpa PtpAffx.159553.1.A1_at CV268435 - - 2e-1 At1g29270 unknown protein C.G. S.X.
0.05 7e-1 34 Triticum aestivum TaAffx.87595.1.S1_at CA744442 - - 7e-1 At1g29270 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1622844_at CF517237 - - 5e+0 At5g06480 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.3939.1.A1_at AY111051.1 hypothetical protein LOC100273567 - 1e+0 At3g44280 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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