CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29200

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At1g29200 839795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.80 89.8 At5g26330 832702 plastocyanin-like domain-containing protein / mavicyanin, putative F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PF S.X. H.G.
0.78 88.6 At2g38320 818412 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.77 88.0 At5g19870 832108 unknown protein F:unknown;P:unknown;C:endomembrane system;MP S.X. H.G.
0.77 88.0 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At5g12870 831127 MYB46 (MYB DOMAIN PROTEIN 46) Member of the R2R3 factor gene family. S.X. H.G.
0.74 86.1 At1g10800 837623 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.70 83.5 At5g01930 831699 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA S.X. H.G.
0.69 82.9 At1g71930 843524 VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7) Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids. S.X. H.G.
0.68 82.2 At2g46760 819289 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
214.2 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
172.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
168.9 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
149.5 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.4 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
140.9 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
137.9 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
123.3 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
120.2 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
116.5 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 2e-7 57 At1g11990 837751 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e-3 44 At1g62330 842531 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB C.G. S.X.
0.01 2e-1 38 At1g74470 843788 geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate. C.G. S.X.
0.01 7e-1 36 At3g19610 821498 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBF C.G. S.X.
0.01 7e-1 36 At3g22220 821786 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 42 Glycine max Gma.6443.1.S1_at BQ610084 - - 1e-2 At1g62330 unknown protein C.G. S.X.
0.02 6e+0 32 Hordeum vulgare EBpi01_SQ005_B24_at EBpi01_SQ005_B24 - - 1e+0 At1g42960 - C.G. S.X.
0.04 1e-4 50 Oryza sativa Os06g0545900 AK070128.1 - - 9e-5 At1g29200 unknown protein C.G. S.X.
0.12 1e-12 75 Populus trichocarpa PtpAffx.63792.1.A1_s_at CV227533 hypothetical protein - 5e-13 At1g29200 unknown protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.128541.41.S1_at CA702191 - - 3e-1 At1g29200 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1611115_s_at CB344303 hypothetical protein LOC100244716 - 3e-20 At3g21700 SGP2 C.G. S.X.
0.02 8e-2 38 Zea mays ZmAffx.599.1.S1_at AI715027 - - 3e+0 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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