CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29070

Gene name ribosomal protein L34 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At1g29070 839781 ribosomal protein L34 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF S.X. H.G.
0.50 65.3 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP S.X. H.G.
0.50 65.3 At2g24090 816943 ribosomal protein L35 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMF S.X. H.G.
0.44 57.2 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 S.X. H.G.
0.33 38.1 At2g33450 817910 50S ribosomal protein L28, chloroplast (CL28) F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 98.1 GSM245495 9 hr Hypoxia Stress 1 hr recovery IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
4.7 98.0 E-MEXP-791-raw-cel-1122937524
4.6 97.9 GSM131817 Quick_A64_3-12hr_Rep3_ATH1 GSE5638 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
4.5 97.8 GSM245485 9 hr Hypoxia Stress 1 hr recovery IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
4.4 97.8 GSM268010 Col-0, Time 0, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
4.4 97.8 GSM269482 mkk1, no-treatment, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
4.3 97.7 E-TABM-18-raw-cel-489543365
4.3 97.7 GSM131501 ATGE_10_A GSE5630 AtGenExpress: Developmental series (leaves)
4.3 97.7 GSM131522 ATGE_17_A GSE5630 AtGenExpress: Developmental series (leaves)
4.2 97.6 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 36 At1g17720 838348 ATB BETA type 2A protein serine/threonine phosphatase 55 kDa B C.G. S.X.
0.02 9e-1 34 At5g40870 834088 AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1) Encodes a protein that appears to possess both uridine kinase and uracil phosphoribosyltransferase activities. C.G. S.X.
0.01 9e-1 34 At5g56360 835736 calmodulin-binding protein F:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVA C.G. S.X.
0.03 9e-1 34 At3g15810 820824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.03 4e+0 32 At5g23900 832455 60S ribosomal protein L13 (RPL13D) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MFOP C.G. S.X.
0.02 4e+0 32 At5g60130 836135 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-8 57 Glycine max Gma.11178.1.S1_at CD395248 - - 1e-7 At1g29070 ribosomal protein L34 family protein C.G. S.X.
0.04 4e-1 34 Hordeum vulgare Contig10261_s_at Contig10261 - - 3e+0 At4g32090 galactosyltransferase C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.29204.1.S1_at - - - 0 C.G. S.X.
0.05 5e+0 32 Populus trichocarpa PtpAffx.219627.1.S1_at pmrna35589 hypothetical protein - 5e+0 At2g02140 LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72) C.G. S.X.
0.04 2e-1 36 Triticum aestivum Ta.9047.3.S1_at CA712451 - - 4e+0 At5g39140 unknown protein C.G. S.X.
0.20 1e-12 71 Vitis vinifera 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein C.G. S.X.
0.03 6e+0 30 Zea mays ZmAffx.391.1.A1_at AI676819 - - 1e-2 At2g25685 SCRL17 (SCR-Like 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
C GO:0042254 The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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