CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g29020

Gene name calcium-binding EF hand family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF S.X. H.G.
0.80 89.8 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P S.X. H.G.
0.75 86.9 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P S.X. H.G.
0.67 81.6 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.67 81.6 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
179.0 100.0 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
167.3 100.0 GSM184532 Protoplasted root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
158.9 99.9 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
141.7 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
117.1 99.9 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
114.7 99.9 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
95.8 99.9 GSM184535 Protoplasted root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
95.6 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
82.0 99.9 GSM218596 Whole roots 3.5hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.0 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 3e-51 204 At2g34030 817964 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;PMOFBA C.G. S.X.
0.28 1e-47 192 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF C.G. S.X.
0.01 4e-1 38 At2g23180 816850 CYP96A1 member of CYP96A C.G. S.X.
0.01 2e+0 36 At5g64170 836538 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMA C.G. S.X.
0.01 2e+0 36 At5g60300 836152 lectin protein kinase family protein Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion. C.G. S.X.
0.01 2e+0 36 At5g08430 830742 SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein F:DNA binding;P:histone modification, transcription initiation;C:nucleus;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Glycine max GmaAffx.24460.1.A1_at BU550704 - - 1e+0 At3g48346 unknown protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) C.G. S.X.
0.01 3e+0 36 Oryza sativa OsAffx.12625.1.S1_at - - - 0 C.G. S.X.
0.01 6e-1 38 Populus trichocarpa PtpAffx.209041.1.S1_at pmrna17898 - - 5e-8 At4g02080 ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2) C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.6358.1.S1_at CA687432 - - 2e-1 At5g36000 unknown protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1606634_at CF206214.1 hypothetical protein LOC100241372 - 5e+0 At5g48920 TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) C.G. S.X.
0.01 7e-1 36 Zea mays Zm.3069.1.A1_at CF010027 hypothetical protein LOC100192787 - 2e+0 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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