CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g28610

Gene name GDSL-motif lipase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g28610 839761 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM S.X. H.G.
0.46 59.8 At4g10000 826591 electron carrier/ protein disulfide oxidoreductase F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;BOPAFM S.X. H.G.
0.45 58.3 At1g18360 838417 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOPMFVA S.X. H.G.
0.43 55.3 At1g28140 839708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO S.X. H.G.
0.42 53.9 At4g18520 827584 - F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.41 52.4 At5g39830 833979 DEG8 Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II. S.X. H.G.
0.40 50.8 At5g55990 835697 CBL2 (CALCINEURIN B-LIKE 2) Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family. S.X. H.G.
0.38 46.7 At1g76020 843933 - F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF S.X. H.G.
0.37 45.0 At1g74640 843803 unknown protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPAO S.X. H.G.
0.37 45.0 At3g17930 819775 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
143.1 99.9 GSM38670 DSNP GSE2268 Arabidopsis polysome microarray
75.1 99.9 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
31.0 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.5 99.7 E-TABM-52-raw-cel-1583683342
29.4 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.8 99.7 E-MEXP-557-raw-cel-879731547
24.8 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
24.4 99.6 GSM134365 St.Clair_1-26_371_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
24.0 99.6 GSM134363 St.Clair_1-24_437_Cvi-1_0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
24.0 99.6 E-MEXP-557-raw-cel-879731493
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 4e-121 434 At1g28600 839760 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cell wall;PBOM C.G. S.X.
0.49 3e-88 325 At1g28590 839759 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.47 6e-74 278 At2g27360 817279 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.40 1e-62 240 At1g28580 839758 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFM C.G. S.X.
0.46 8e-58 224 At1g31550 840045 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOM C.G. S.X.
0.39 1e-56 220 At1g28570 839757 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e+0 32 Glycine max GmaAffx.80740.1.S1_at BE191498 - - 9e-1 At1g29410 PAI3 (phosphoribosylanthranilate isomerase 3) C.G. S.X.
0.04 3e-3 42 Hordeum vulgare Contig13714_at Contig13714 - - 6e-4 At2g27360 lipase, putative C.G. S.X.
0.08 8e-4 46 Oryza sativa Os01g0330100 AK100480.1 - - 2e-3 At1g28610 GDSL-motif lipase, putative C.G. S.X.
0.04 5e-1 36 Populus trichocarpa PtpAffx.203847.1.S1_s_at pmrna7594 hypothetical protein - 5e-1 At1g28610 GDSL-motif lipase, putative C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.92589.1.S1_at CA633836 - - 5e-3 At1g28640 GDSL-motif lipase, putative C.G. S.X.
0.06 7e-3 40 Vitis vinifera 1608244_at CF568844 - - 7e-5 At1g28570 GDSL-motif lipase, putative C.G. S.X.
0.03 6e-1 34 Zea mays Zm.2974.1.A1_at AW120131 - - 1e+0 At1g28610 GDSL-motif lipase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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